Variant report

Variant	rs2431049
Chromosome Location	chr7:137925419-137925420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2431048	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2465077	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2465903	0.80[EUR][1000 genomes]
rs2465909	0.86[CHD][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831152	chr7:137884311-138033117	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2431049	BPGM	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137905800-137928600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:137915000-137931800	Weak transcription	Right Atrium	heart
3	chr7:137921800-137929400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:137924200-137928400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:137924400-137927400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:137924400-137927800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:137924600-137927400	Weak transcription	Liver	Liver
8	chr7:137924600-137927600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr7:137924600-137928200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr7:137924600-137929400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr7:137925400-137925600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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