Variant report

Variant	rs2431175
Chromosome Location	chr5:164949332-164949333
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs183158	0.82[ASN][1000 genomes]
rs2249616	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018838	chr5:164942118-165164396	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164948600-164949800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr5:164948800-164949400	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr5:164948800-164949600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:164949000-164949600	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr5:164949000-164949800	Active TSS	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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