Variant report

Variant	rs2432041
Chromosome Location	chr19:36709851-36709852
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:36709335..36711888-chr19:36719668..36721435,2	K562	blood:
2	chr19:36705375..36707856-chr19:36708894..36710593,4	MCF-7	breast:
3	chr19:36705207..36708225-chr19:36708519..36712657,6	K562	blood:
4	chr19:36545669..36547627-chr19:36708408..36710754,2	K562	blood:

Variant related genes	Relation type
ENSG00000075702	Chromatin interaction
ENSG00000196357	Chromatin interaction
ENSG00000167635	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1862566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2310857	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs8110475	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3526489	chr19:36306483-36741945	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
2	esv3526490	chr19:36306483-36741945	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36706800-36710800	Weak transcription	Esophagus	oesophagus
2	chr19:36706800-36716400	Weak transcription	Aorta	Aorta
3	chr19:36707000-36710000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr19:36707000-36710000	Weak transcription	Fetal Intestine Large	intestine
5	chr19:36707000-36710200	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr19:36707000-36711000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr19:36707000-36711800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr19:36707000-36711800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr19:36707000-36711800	Weak transcription	Colonic Mucosa	Colon
10	chr19:36707000-36712800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr19:36707000-36712800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr19:36707000-36716200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr19:36707000-36726800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr19:36707200-36710000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr19:36707200-36710000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr19:36707200-36710000	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr19:36707200-36710400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr19:36707200-36712600	Weak transcription	NHDF-Ad	bronchial
19	chr19:36707400-36710000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr19:36707400-36710000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr19:36707400-36710200	Weak transcription	Fetal Thymus	thymus
22	chr19:36707400-36710800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr19:36707400-36730200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr19:36707600-36710200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr19:36707600-36711600	Weak transcription	NHEK	skin
26	chr19:36707600-36711800	Weak transcription	Primary B cells from cord blood	blood
27	chr19:36707600-36712400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr19:36707600-36712800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr19:36707600-36713000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr19:36707600-36731800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr19:36707800-36710000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr19:36707800-36710000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr19:36707800-36710000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr19:36707800-36710000	Weak transcription	Liver	Liver
35	chr19:36707800-36710000	Weak transcription	Osteobl	bone
36	chr19:36707800-36710200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr19:36707800-36710200	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr19:36707800-36710200	Weak transcription	HMEC	breast
39	chr19:36707800-36710200	Weak transcription	HUVEC	blood vessel
40	chr19:36707800-36710200	Weak transcription	NH-A	brain
41	chr19:36707800-36710400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr19:36707800-36710400	Weak transcription	Fetal Kidney	kidney
43	chr19:36707800-36710600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr19:36707800-36710600	Weak transcription	Colon Smooth Muscle	Colon
45	chr19:36707800-36711000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr19:36707800-36711800	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr19:36707800-36712000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr19:36707800-36712400	Weak transcription	Small Intestine	intestine
49	chr19:36707800-36712800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr19:36707800-36712800	Weak transcription	Brain Cingulate Gyrus	brain

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