Variant report

Variant	rs2433148
Chromosome Location	chr8:6500244-6500245
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr8:6500129-6500251	MCF10A-Er-Src	breast:	n/a	n/a
2	MAX	chr8:6500005-6500490	HCT-116	colon:	n/a	chr8:6500377-6500386
3	MYC	chr8:6500064-6500391	MCF10A-Er-Src	breast:	n/a	chr8:6500377-6500386
4	GATA3	chr8:6499568-6500540	SK-N-SH	brain:	n/a	chr8:6499905-6499914
5	FOS	chr8:6500063-6500329	MCF10A-Er-Src	breast:	n/a	n/a
6	MAX	chr8:6499985-6500447	SK-N-SH	brain:	n/a	chr8:6500377-6500386
7	GATA3	chr8:6499483-6500485	SK-N-SH	brain:	n/a	chr8:6499905-6499914 chr8:6499540-6499550
8	MEF2A	chr8:6499839-6500521	SK-N-SH	brain:	n/a	chr8:6500418-6500435 chr8:6500419-6500434 chr8:6500419-6500435 chr8:6500039-6500054
9	FOS	chr8:6500053-6500351	MCF10A-Er-Src	breast:	n/a	n/a
10	STAT3	chr8:6500027-6500320	MCF10A-Er-Src	breast:	n/a	n/a
11	MAX	chr8:6500019-6500502	SK-N-SH	brain:	n/a	chr8:6500377-6500386
12	NFIC	chr8:6499908-6500463	SK-N-SH	brain:	n/a	n/a
13	EP300	chr8:6499860-6500557	SK-N-SH	brain:	n/a	n/a
14	FOS	chr8:6500070-6500317	MCF10A-Er-Src	breast:	n/a	n/a
15	STAT3	chr8:6499989-6500332	MCF10A-Er-Src	breast:	n/a	n/a
16	MYC	chr8:6500072-6500369	MCF10A-Er-Src	breast:	n/a	n/a
17	E2F4	chr8:6500141-6500374	MCF10A-Er-Src	breast:	n/a	n/a
18	POLR2A	chr8:6500008-6500424	U87	brain:	n/a	n/a
19	NFIC	chr8:6499773-6500575	SK-N-SH	brain:	n/a	n/a
20	STAT3	chr8:6500124-6500308	MCF10A-Er-Src	breast:	n/a	n/a
21	TCF12	chr8:6499814-6500633	SK-N-SH	brain:	n/a	chr8:6499858-6499865
22	STAT3	chr8:6500033-6500351	MCF10A-Er-Src	breast:	n/a	n/a
23	TCF12	chr8:6499751-6500603	SK-N-SH	brain:	n/a	chr8:6499858-6499865
24	POLR2A	chr8:6499978-6500352	SK-N-SH	brain:	n/a	n/a
25	POLR2A	chr8:6500244-6500293	ProgFib	skin:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:6498880..6501314-chr8:6501971..6503524,2	K562	blood:

Variant related genes	Relation type
ENSG00000271927	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13262885	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17633045	1.00[CEU][hapmap]
rs2433146	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs2433147	1.00[CEU][hapmap]
rs2454525	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2515566	0.86[CEU][hapmap]
rs34243497	0.96[ASN][1000 genomes]
rs34622506	0.86[ASN][1000 genomes]
rs67736759	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71525748	0.96[ASN][1000 genomes]
rs71525749	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021175	chr8:5965453-6880364	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1027682	chr8:6018123-6920312	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv3506199	chr8:6116693-6536592	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
4	esv3506200	chr8:6116693-6536592	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1015981	chr8:6286575-6578450	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1027313	chr8:6286575-6920312	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	nsv1021684	chr8:6350091-6809455	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	esv2422383	chr8:6362389-6781593	Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv610004	chr8:6402366-6772913	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
10	nsv1029241	chr8:6411300-6761720	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
11	nsv933075	chr8:6456475-7366650	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
12	nsv1025976	chr8:6472948-6686972	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
13	nsv933768	chr8:6482944-6618221	Strong transcription Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
14	nsv610005	chr8:6490665-6535690	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv1024024	chr8:6490665-6555558	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	esv2761219	chr8:6494655-6505115	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv890059	chr8:6498174-6554615	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:6474200-6505200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:6476400-6502800	Weak transcription	Colonic Mucosa	Colon
3	chr8:6480000-6502000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr8:6480200-6501800	Weak transcription	NHEK	skin
5	chr8:6480200-6502000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr8:6480200-6502600	Weak transcription	Gastric	stomach
7	chr8:6480200-6523800	Weak transcription	Fetal Brain Female	brain
8	chr8:6480400-6502200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:6480400-6505400	Weak transcription	Lung	lung
10	chr8:6481800-6501800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr8:6482000-6501800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:6482000-6503600	Weak transcription	Esophagus	oesophagus
13	chr8:6482200-6501200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr8:6483800-6504400	Weak transcription	Liver	Liver
15	chr8:6484000-6502000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr8:6484000-6502200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr8:6484400-6502400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr8:6484400-6503000	Weak transcription	Spleen	Spleen
19	chr8:6484400-6503400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr8:6484800-6505200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr8:6485000-6500400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr8:6485000-6502800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr8:6485000-6504400	Weak transcription	Fetal Intestine Large	intestine
24	chr8:6485200-6502000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr8:6485400-6501400	Weak transcription	Fetal Intestine Small	intestine
26	chr8:6485400-6503800	Weak transcription	Fetal Stomach	stomach
27	chr8:6487400-6502000	Weak transcription	Primary B cells from cord blood	blood
28	chr8:6487400-6502000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr8:6487600-6501000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr8:6487800-6502000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr8:6488800-6502000	Weak transcription	GM12878-XiMat	blood
32	chr8:6489800-6500400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr8:6495000-6502200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr8:6496600-6502600	Weak transcription	Pancreas	Pancrea
35	chr8:6496600-6503800	Weak transcription	Ovary	ovary
36	chr8:6498200-6501400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr8:6498200-6502000	Enhancers	Muscle Satellite Cultured Cells	--
38	chr8:6498200-6502000	Enhancers	NHDF-Ad	bronchial
39	chr8:6498400-6500400	Enhancers	HMEC	breast
40	chr8:6498400-6500600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr8:6498400-6500800	Enhancers	HSMMtube	muscle
42	chr8:6498400-6503200	Enhancers	HSMM	muscle
43	chr8:6498600-6502000	Weak transcription	Hela-S3	cervix
44	chr8:6498600-6502200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr8:6498600-6504600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr8:6498800-6502000	Strong transcription	Dnd41	blood
47	chr8:6499000-6502200	Strong transcription	Fetal Thymus	thymus
48	chr8:6499600-6500800	Enhancers	Fetal Heart	heart
49	chr8:6499600-6500800	Enhancers	Osteobl	bone
50	chr8:6499600-6502800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links