Variant report

Variant	rs2433200
Chromosome Location	chr15:57919311-57919312
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2442076	1.00[AFR][1000 genomes]
rs4461013	1.00[YRI][hapmap];0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv530682	chr15:57912502-58108285	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57894400-57938200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr15:57900600-57941600	Weak transcription	Colonic Mucosa	Colon
3	chr15:57904400-57935200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:57904600-57921600	Weak transcription	Fetal Stomach	stomach
5	chr15:57904600-57936400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:57905000-57940800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:57912200-57924000	Weak transcription	Esophagus	oesophagus
8	chr15:57912200-57939200	Weak transcription	Placenta	Placenta
9	chr15:57912400-57921600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:57912400-57923800	Weak transcription	Lung	lung
11	chr15:57912800-57931600	Weak transcription	Spleen	Spleen
12	chr15:57914800-57926600	Weak transcription	Hela-S3	cervix
13	chr15:57915600-57927400	Strong transcription	Fetal Intestine Small	intestine
14	chr15:57916400-57920200	Genic enhancers	Fetal Heart	heart
15	chr15:57916600-57927600	Strong transcription	Fetal Intestine Large	intestine
16	chr15:57917000-57919800	Genic enhancers	Left Ventricle	heart
17	chr15:57917200-57919800	Genic enhancers	Right Ventricle	heart
18	chr15:57917600-57935400	Weak transcription	Stomach Mucosa	stomach
19	chr15:57917800-57919400	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr15:57917800-57919800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr15:57918000-57920000	Enhancers	Aorta	Aorta
22	chr15:57918000-57920000	Enhancers	HUVEC	blood vessel
23	chr15:57918200-57919800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr15:57918200-57920000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:57918200-57921600	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr15:57918400-57920400	Weak transcription	Duodenum Mucosa	Duodenum
27	chr15:57918400-57921600	Weak transcription	Gastric	stomach
28	chr15:57918400-57921600	Weak transcription	Pancreas	Pancrea
29	chr15:57918400-57921600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr15:57918400-57927800	Weak transcription	Colon Smooth Muscle	Colon
31	chr15:57918600-57919400	Enhancers	Brain Germinal Matrix	brain
32	chr15:57918600-57920000	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr15:57918600-57921600	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr15:57918600-57924000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr15:57918800-57919400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr15:57919000-57919400	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr15:57919000-57919400	Enhancers	Adipose Nuclei	Adipose
38	chr15:57919000-57919400	Enhancers	Brain Angular Gyrus	brain
39	chr15:57919000-57919400	Enhancers	Brain Anterior Caudate	brain
40	chr15:57919000-57919400	Enhancers	Brain Substantia Nigra	brain
41	chr15:57919000-57919400	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr15:57919000-57919400	Enhancers	Fetal Lung	lung
43	chr15:57919000-57919400	Enhancers	Fetal Muscle Trunk	muscle
44	chr15:57919000-57919400	Enhancers	Fetal Muscle Leg	muscle
45	chr15:57919000-57919600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr15:57919000-57919600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr15:57919000-57919800	Enhancers	H1 Cell Line	embryonic stem cell
48	chr15:57919000-57919800	Enhancers	Right Atrium	heart
49	chr15:57919000-57920200	Enhancers	Psoas Muscle	Psoas
50	chr15:57919200-57919800	Enhancers	Ovary	ovary

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