Variant report

Variant	rs2433235
Chromosome Location	chr8:52929877-52929878
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2280179	0.87[JPT][hapmap]
rs2554462	0.83[ASN][1000 genomes]
rs2554465	0.81[ASN][1000 genomes]
rs2677208	0.83[ASN][1000 genomes]
rs2677209	0.82[ASN][1000 genomes]
rs268926	0.87[ASN][1000 genomes]
rs6473675	0.80[JPT][hapmap]
rs6473676	0.80[JPT][hapmap]
rs6473677	0.80[JPT][hapmap]
rs6982212	0.80[JPT][hapmap]
rs7005809	0.80[JPT][hapmap]
rs9298469	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv890899	chr8:52924095-52964522	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv611354	chr8:52928389-52948177	Enhancers Weak transcription Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52921200-52932800	Weak transcription	Pancreas	Pancrea
2	chr8:52927000-52932800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:52929600-52930000	Enhancers	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links