Variant report

Variant	rs2434343
Chromosome Location	chr5:68364871-68364872
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCDC125-12	chr5:68364752-68365027	NONHSAT101884

Extended variants
information (count: 56 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10045327	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1623118	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1629142	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs164800	0.91[CHB][hapmap]
rs1650755	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1650756	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1650768	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1650769	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1650770	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1650771	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1650772	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1650773	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1650774	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1650775	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1683827	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1683828	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1683829	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1683834	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1683835	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1683837	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1683838	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2172058	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2434346	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2434347	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2434348	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2434349	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2450229	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2450233	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2451840	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2451843	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2560446	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2560448	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2560449	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2560450	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2560452	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2560453	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2560454	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2637130	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2637131	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2637133	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2637134	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2637135	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2637137	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2637138	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2637139	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2637140	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2637141	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2913705	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2913706	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2913710	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2913711	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2932794	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2932795	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4616847	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.81[ASN][1000 genomes]
rs59786125	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv968920	chr5:68350235-68371417	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2434343	CD180	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68360200-68370200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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