Variant report

Variant	rs2436180
Chromosome Location	chr1:174622325-174622326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1754369	0.84[EUR][1000 genomes]
rs1970756	0.84[EUR][1000 genomes]
rs2505261	0.84[EUR][1000 genomes]
rs34296978	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1014753	chr1:174271770-174694838	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
5	nsv534381	chr1:174468168-174656796	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1803591	chr1:174594575-174642336	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174607600-174628600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr1:174607600-174637000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr1:174607600-174677800	Weak transcription	Primary B cells from cord blood	blood
4	chr1:174612400-174638200	Weak transcription	Aorta	Aorta
5	chr1:174613600-174637000	Weak transcription	Primary T cells from cord blood	blood
6	chr1:174617800-174625800	Weak transcription	HepG2	liver
7	chr1:174621600-174622400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:174621600-174622800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr1:174621600-174622800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr1:174621600-174623400	Enhancers	Left Ventricle	heart
11	chr1:174621600-174625200	Enhancers	Fetal Lung	lung
12	chr1:174621800-174622800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr1:174621800-174622800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:174621800-174622800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr1:174621800-174623000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:174621800-174623000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr1:174621800-174623200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr1:174621800-174623200	Enhancers	Fetal Heart	heart
19	chr1:174622000-174622800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr1:174622200-174622400	Weak transcription	Lung	lung
21	chr1:174622200-174622600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr1:174622200-174622800	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr1:174622200-174623200	Weak transcription	Fetal Brain Male	brain
24	chr1:174622200-174623400	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr1:174622200-174626000	Weak transcription	Fetal Intestine Small	intestine

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