Variant report

Variant	rs2436561
Chromosome Location	chr8:108394033-108394034
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11785702	0.87[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1433191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1433192	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1560737	0.85[ASN][1000 genomes]
rs16876217	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs2436559	0.90[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2436563	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2436564	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2514867	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4268102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60123360	0.85[ASN][1000 genomes]
rs60535810	0.85[ASN][1000 genomes]
rs62513195	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6981543	0.83[CHB][hapmap];0.87[JPT][hapmap];0.97[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7009628	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764100	chr8:108220671-108469233	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1030831	chr8:108224295-108466437	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv539714	chr8:108224295-108466437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108387000-108394800	Weak transcription	Fetal Heart	heart
2	chr8:108387200-108395200	Weak transcription	Psoas Muscle	Psoas
3	chr8:108388800-108394400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:108389800-108401200	Weak transcription	Fetal Kidney	kidney
5	chr8:108390000-108394600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr8:108390000-108394800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:108390000-108395400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr8:108390200-108395200	Weak transcription	Osteobl	bone
9	chr8:108390400-108397000	Weak transcription	Fetal Lung	lung
10	chr8:108391600-108395400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:108392400-108396000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr8:108392800-108395000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr8:108393200-108394200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr8:108393400-108394800	Weak transcription	Aorta	Aorta
15	chr8:108393600-108394800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr8:108393800-108397000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr8:108393800-108397800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr8:108393800-108397800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr8:108393800-108398200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr8:108394000-108394600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr8:108394000-108397000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr8:108394000-108401400	Weak transcription	Ovary	ovary

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