Variant report

Variant	rs2436907
Chromosome Location	chr8:103559772-103559773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1434279	0.81[CHB][hapmap]
rs1434280	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs2033558	0.87[ASN][1000 genomes]
rs2117331	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2436895	0.93[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2436898	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2436902	0.81[CHB][hapmap]
rs2436904	0.82[EUR][1000 genomes]
rs2436905	0.83[EUR][1000 genomes]
rs2436906	0.83[EUR][1000 genomes]
rs2511705	0.81[CHB][hapmap]
rs2511732	0.81[EUR][1000 genomes]
rs2511733	0.83[EUR][1000 genomes]
rs2511734	0.80[EUR][1000 genomes]
rs2511735	0.83[EUR][1000 genomes]
rs2511759	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs2511760	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs892504	0.81[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs892506	1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1031769	chr8:103460754-103620283	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv539703	chr8:103460754-103620283	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv2762761	chr8:103492356-103625244	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	esv1831575	chr8:103498317-103585093	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv1838972	chr8:103498317-103585093	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1024876	chr8:103512785-103576658	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv3419415	chr8:103525141-103575507	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103550800-103589000	Weak transcription	Right Atrium	heart
2	chr8:103554000-103569000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:103554400-103565800	Weak transcription	GM12878-XiMat	blood
4	chr8:103557000-103569200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:103557200-103582000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:103558000-103560600	Enhancers	K562	blood
7	chr8:103558800-103560000	Enhancers	Psoas Muscle	Psoas
8	chr8:103559000-103559800	Enhancers	A549	lung
9	chr8:103559200-103559800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:103559600-103559800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
11	chr8:103559600-103560000	Enhancers	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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