Variant report

Variant	rs2436936
Chromosome Location	chr8:103677723-103677724
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10106298	0.82[EUR][1000 genomes]
rs1076030	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13275089	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1434281	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1550005	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17773903	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2099408	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2436940	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3191333	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4734654	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7002992	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1028329	chr8:103574775-103684362	Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv1026755	chr8:103676970-103728556	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1018625	chr8:103676970-103729197	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103670800-103678800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:103671000-103678600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr8:103671200-103678400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr8:103674600-103679000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:103675400-103678000	Weak transcription	Liver	Liver
6	chr8:103675400-103678400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr8:103675400-103678400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr8:103675400-103678800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr8:103675400-103679000	Weak transcription	Hela-S3	cervix
10	chr8:103675400-103682600	Weak transcription	Right Ventricle	heart
11	chr8:103675400-103698200	Weak transcription	Osteobl	bone
12	chr8:103675600-103678000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr8:103675600-103678200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr8:103675600-103678400	Weak transcription	Placenta	Placenta
15	chr8:103675600-103679800	Weak transcription	K562	blood
16	chr8:103675600-103692800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr8:103675800-103688200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr8:103676000-103678600	Weak transcription	Primary B cells from peripheral blood	blood
19	chr8:103677000-103679000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links