Variant report

Variant	rs2437772
Chromosome Location	chr8:97512977-97512978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2437771	0.84[AMR][1000 genomes]
rs2437780	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2439520	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2440683	0.83[AMR][1000 genomes]
rs2452995	0.81[AMR][1000 genomes]
rs2515126	0.81[EUR][1000 genomes]
rs2515127	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831404	chr8:97426263-97597735	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv519431	chr8:97476956-97518925	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:97507800-97515000	Weak transcription	Gastric	stomach
2	chr8:97508400-97513000	Weak transcription	Fetal Brain Female	brain
3	chr8:97509000-97514400	Weak transcription	Fetal Intestine Large	intestine
4	chr8:97509200-97518800	Weak transcription	Fetal Intestine Small	intestine
5	chr8:97509400-97518000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr8:97509600-97515200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr8:97509600-97516600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr8:97509600-97521800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:97509600-97522000	Weak transcription	NH-A	brain
10	chr8:97509800-97513200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr8:97509800-97515600	Enhancers	Liver	Liver
12	chr8:97509800-97522000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr8:97510000-97513600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr8:97510000-97513800	Enhancers	Ovary	ovary
15	chr8:97510000-97514800	Weak transcription	Aorta	Aorta
16	chr8:97510000-97516400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr8:97510000-97517800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr8:97510000-97523200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr8:97510200-97513200	Weak transcription	Fetal Kidney	kidney
20	chr8:97510200-97521200	Weak transcription	NHLF	lung
21	chr8:97510200-97523400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:97510600-97519600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr8:97510600-97523400	Weak transcription	Lung	lung
24	chr8:97511000-97523400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr8:97511200-97526600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr8:97511400-97519000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr8:97512000-97521600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr8:97512200-97515000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr8:97512200-97522200	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr8:97512400-97513200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr8:97512400-97513400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr8:97512400-97513600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr8:97512400-97521000	Weak transcription	Fetal Stomach	stomach
34	chr8:97512400-97521400	Weak transcription	NHDF-Ad	bronchial
35	chr8:97512600-97513000	Weak transcription	HepG2	liver
36	chr8:97512600-97514400	Weak transcription	Fetal Muscle Leg	muscle
37	chr8:97512600-97514800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr8:97512600-97515000	Weak transcription	Fetal Lung	lung
39	chr8:97512600-97515000	Weak transcription	Right Atrium	heart
40	chr8:97512600-97521000	Weak transcription	Stomach Smooth Muscle	stomach
41	chr8:97512600-97521800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr8:97512600-97521800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr8:97512600-97522000	Weak transcription	Rectal Smooth Muscle	rectum
44	chr8:97512600-97522200	Weak transcription	Colon Smooth Muscle	Colon
45	chr8:97512600-97523200	Weak transcription	Pancreas	Pancrea

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