Variant report

Variant	rs244041
Chromosome Location	chr4:111229311-111229312
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13151687	0.95[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs171505	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2108406	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs244037	0.86[EUR][1000 genomes]
rs244039	0.81[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs244043	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs244052	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs244053	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs244057	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs244059	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2713947	0.82[CEU][hapmap];0.81[JPT][hapmap];0.80[EUR][1000 genomes]
rs2713948	0.81[EUR][1000 genomes]
rs2713951	0.81[EUR][1000 genomes]
rs420932	0.95[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4698823	0.86[CEU][hapmap];0.87[GIH][hapmap];0.86[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:111227800-111230000	Weak transcription	Fetal Lung	lung
2	chr4:111228200-111230600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:111228200-111230600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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