Variant report

Variant	rs2441026
Chromosome Location	chr5:53444498-53444499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:53441896..53444875-chr5:53446672..53450274,3	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10042336	0.85[AFR][1000 genomes]
rs10055804	0.81[YRI][hapmap]
rs10057147	0.90[LWK][hapmap];0.92[YRI][hapmap]
rs10065324	0.81[YRI][hapmap]
rs11953312	0.81[YRI][hapmap]
rs13354200	0.81[YRI][hapmap]
rs13359210	0.91[YRI][hapmap]
rs149542	1.00[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap]
rs151804	0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs151806	1.00[CHB][hapmap];0.90[CHD][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs154021	0.88[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs154022	1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs16882296	0.90[LWK][hapmap];0.89[YRI][hapmap]
rs16882383	0.90[LWK][hapmap];0.89[YRI][hapmap]
rs169382	1.00[CHB][hapmap];0.90[CHD][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs172139	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs202981	1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs2454916	0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2457161	0.97[ASN][1000 genomes]
rs2457162	0.97[ASN][1000 genomes]
rs26774	0.88[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs27554	0.88[CHB][hapmap]
rs27696	0.95[CHD][hapmap]
rs277326	0.81[ASN][1000 genomes]
rs278062	1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs278064	1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs3797248	0.85[CHD][hapmap]
rs3846490	0.81[YRI][hapmap]
rs39671	0.88[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs4373242	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs6896006	0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs702626	1.00[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs7713087	0.83[LWK][hapmap];0.85[YRI][hapmap]
rs806701	0.81[ASN][1000 genomes]
rs9292039	0.85[LWK][hapmap];0.84[YRI][hapmap]
rs9292040	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032632	chr5:52667145-53655624	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv880713	chr5:53198059-53906103	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv881265	chr5:53305742-53504764	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv880619	chr5:53305742-53525671	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv881616	chr5:53305742-53639975	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
6	nsv881018	chr5:53305742-53744849	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
7	nsv880734	chr5:53305742-53770217	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
8	nsv881161	chr5:53305742-53815495	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
9	nsv881600	chr5:53305742-53823285	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
10	nsv598176	chr5:53311502-53739530	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
11	nsv880773	chr5:53311918-53815495	Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
12	nsv1024303	chr5:53317896-53788276	Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
13	nsv1029224	chr5:53317896-53812899	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
14	nsv949098	chr5:53317990-53816782	Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
15	nsv1020517	chr5:53324930-53759046	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
16	nsv1015340	chr5:53326385-53471882	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
17	nsv1017768	chr5:53326385-53752165	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
18	nsv1032352	chr5:53327170-53762973	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
19	nsv598177	chr5:53333477-53755208	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
20	nsv881056	chr5:53368869-53744849	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
21	nsv881408	chr5:53386267-53815495	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:53409200-53448000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:53409200-53465600	Weak transcription	Fetal Intestine Large	intestine
3	chr5:53425400-53467200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:53428000-53471600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr5:53429400-53455800	Weak transcription	Fetal Intestine Small	intestine
6	chr5:53430000-53446600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr5:53430200-53445400	Weak transcription	K562	blood
8	chr5:53431800-53474000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:53432000-53462400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr5:53432200-53467600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr5:53432600-53462000	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr5:53433000-53480800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr5:53435000-53462000	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr5:53440400-53448600	Enhancers	Fetal Heart	heart
15	chr5:53441800-53461600	Weak transcription	Primary B cells from cord blood	blood
16	chr5:53441800-53461800	Weak transcription	Primary T cells from cord blood	blood
17	chr5:53442000-53449400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr5:53442400-53464200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr5:53442600-53444600	Enhancers	Fetal Stomach	stomach
20	chr5:53442800-53468400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr5:53443000-53445800	Weak transcription	Right Ventricle	heart
22	chr5:53443000-53461600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr5:53443000-53466000	Weak transcription	Fetal Muscle Leg	muscle
24	chr5:53443200-53445800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr5:53443200-53473800	Weak transcription	Stomach Smooth Muscle	stomach
26	chr5:53443600-53444600	Enhancers	NHDF-Ad	bronchial
27	chr5:53443600-53445400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr5:53443600-53462200	Weak transcription	Ovary	ovary
29	chr5:53443600-53473800	Weak transcription	Left Ventricle	heart
30	chr5:53443800-53444800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr5:53443800-53468600	Weak transcription	Adipose Nuclei	Adipose
32	chr5:53444000-53444600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr5:53444000-53444600	Enhancers	A549	lung
34	chr5:53444000-53444800	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr5:53444000-53444800	Enhancers	Pancreatic Islets	Pancreatic Islet
36	chr5:53444000-53445000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr5:53444000-53472800	Weak transcription	Lung	lung
38	chr5:53444200-53444600	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr5:53444200-53444600	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr5:53444200-53444600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr5:53444200-53444600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr5:53444200-53444800	Weak transcription	Fetal Lung	lung
43	chr5:53444200-53445000	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr5:53444400-53445200	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr5:53444400-53445200	Enhancers	Small Intestine	intestine
46	chr5:53444400-53455000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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