Variant report

Variant	rs2442370
Chromosome Location	chr13:39338612-39338613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:39258761..39263368-chr13:39334234..39340175,11	MCF-7	breast:
2	chr13:39338538..39339095-chr13:39424750..39425252,2	MCF-7	breast:
3	chr13:39259811..39260806-chr13:39337692..39338863,8	MCF-7	breast:
4	chr13:39336793..39338874-chr13:39485836..39488751,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150893	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1037253	1.00[AMR][1000 genomes]
rs2496396	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39298200-39339600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr13:39333200-39343200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr13:39336400-39339000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:39338000-39339800	Weak transcription	Brain Anterior Caudate	brain
5	chr13:39338000-39340000	Weak transcription	Brain Substantia Nigra	brain
6	chr13:39338000-39340200	Weak transcription	Brain Angular Gyrus	brain
7	chr13:39338000-39341000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr13:39338000-39341200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr13:39338000-39341600	Weak transcription	Fetal Brain Male	brain
10	chr13:39338000-39345000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr13:39338000-39365400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr13:39338200-39341800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr13:39338400-39340000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr13:39338400-39340200	Weak transcription	Brain Hippocampus Middle	brain
15	chr13:39338400-39340400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr13:39338400-39341600	Weak transcription	Fetal Lung	lung
17	chr13:39338400-39345000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr13:39338400-39345200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr13:39338600-39339000	Active TSS	Liver	Liver
20	chr13:39338600-39351800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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