Variant report

Variant	rs2442585
Chromosome Location	chr8:6440725-6440726
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12542610	0.84[ASN][1000 genomes]
rs12546205	1.00[YRI][hapmap]
rs12549365	1.00[YRI][hapmap]
rs12549864	1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.81[ASN][1000 genomes]
rs17553089	1.00[YRI][hapmap]
rs17554274	1.00[YRI][hapmap]
rs17623747	1.00[YRI][hapmap]
rs17624399	1.00[YRI][hapmap]
rs17624865	1.00[YRI][hapmap]
rs2442575	1.00[JPT][hapmap]
rs2442577	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[JPT][hapmap]
rs2442579	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442580	1.00[ASW][hapmap];0.86[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2442581	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs2442582	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2442587	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs2442589	0.86[CEU][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs2515518	0.86[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];0.93[MEX][hapmap];0.81[ASN][1000 genomes]
rs2515519	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3020243	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66817215	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67480403	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021175	chr8:5965453-6880364	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1027682	chr8:6018123-6920312	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv3506199	chr8:6116693-6536592	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
4	esv3506200	chr8:6116693-6536592	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1015981	chr8:6286575-6578450	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1027313	chr8:6286575-6920312	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	nsv1021684	chr8:6350091-6809455	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	esv2422383	chr8:6362389-6781593	Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv610004	chr8:6402366-6772913	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
10	nsv1029241	chr8:6411300-6761720	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:6364200-6478200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr8:6416800-6442400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:6417600-6442800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:6419000-6462400	Weak transcription	GM12878-XiMat	blood
5	chr8:6421600-6462800	Weak transcription	Primary B cells from cord blood	blood
6	chr8:6424200-6442600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:6424400-6442800	Weak transcription	NHEK	skin
8	chr8:6424800-6442200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:6424800-6442600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:6424800-6451600	Weak transcription	Spleen	Spleen
11	chr8:6426400-6442800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr8:6426600-6442800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr8:6427800-6451200	Weak transcription	Adipose Nuclei	Adipose
14	chr8:6428200-6440800	Weak transcription	Thymus	Thymus
15	chr8:6428200-6441000	Weak transcription	Fetal Kidney	kidney
16	chr8:6428200-6442200	Weak transcription	HSMM	muscle
17	chr8:6428200-6450800	Weak transcription	Left Ventricle	heart
18	chr8:6430400-6451000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr8:6431000-6451000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:6431800-6441200	Weak transcription	Hela-S3	cervix
21	chr8:6432200-6453800	Weak transcription	Fetal Intestine Small	intestine
22	chr8:6432400-6457600	Weak transcription	Gastric	stomach
23	chr8:6433600-6451000	Weak transcription	Right Ventricle	heart
24	chr8:6434000-6445400	Weak transcription	K562	blood
25	chr8:6434800-6442600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr8:6435200-6444800	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr8:6435600-6451400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr8:6435600-6453400	Weak transcription	Dnd41	blood
29	chr8:6435800-6442200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr8:6435800-6443000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr8:6436200-6450800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr8:6436600-6452800	Weak transcription	Primary B cells from peripheral blood	blood
33	chr8:6436800-6451400	Weak transcription	Pancreas	Pancrea
34	chr8:6437600-6442200	Weak transcription	Fetal Muscle Leg	muscle
35	chr8:6437800-6442800	Weak transcription	Lung	lung
36	chr8:6437800-6451400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr8:6439000-6445600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr8:6439200-6442600	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr8:6439400-6445800	Enhancers	Fetal Stomach	stomach
40	chr8:6439600-6442800	Weak transcription	Ovary	ovary
41	chr8:6439800-6441400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr8:6440200-6441800	Enhancers	Fetal Thymus	thymus
43	chr8:6440400-6444000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr8:6440600-6441800	Enhancers	Primary T cells from cord blood	blood

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