Variant report

Variant	rs2446471
Chromosome Location	chr8:113877626-113877627
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:185653287..185655288-chr8:113877614..113879705,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136527	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10081489	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs10106945	0.89[ASN][1000 genomes]
rs10216505	0.89[ASN][1000 genomes]
rs12334432	0.80[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs13261060	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs1549354	0.89[JPT][hapmap]
rs1991136	0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs1991137	0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs2113666	0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs2161925	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs231279	0.80[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs231281	0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs231286	0.80[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs2355821	0.89[JPT][hapmap]
rs2432737	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2432738	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2432739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2432742	0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs2446470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2446472	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2511531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2511532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2511534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs61584754	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6999481	0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs7004983	0.88[JPT][hapmap]
rs7005129	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs7006410	0.89[JPT][hapmap]
rs72680285	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7817596	0.89[ASN][1000 genomes]
rs7817723	0.89[JPT][hapmap]
rs7817836	0.80[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs7832050	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs889987	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs9297478	0.88[JPT][hapmap]
rs9297479	0.89[JPT][hapmap]
rs9297480	0.89[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv534270	chr8:113585830-113979075	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
3	esv2754315	chr8:113736824-114048824	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv891326	chr8:113777669-114091732	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv891327	chr8:113828980-114109342	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113877200-113877800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:113877200-113878400	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links