Variant report

Variant	rs2451142
Chromosome Location	chr8:119128220-119128221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119123665..119126996-chr8:119127201..119129943,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182197	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1457202	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2445908	0.81[AFR][1000 genomes]
rs2445922	0.82[JPT][hapmap]
rs2451133	0.95[CEU][hapmap];0.89[CHB][hapmap];0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2468136	0.95[CEU][hapmap];0.95[CHB][hapmap];0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2468137	0.95[CEU][hapmap];0.84[CHB][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2468156	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2514730	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2514757	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2514759	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2514765	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs897829	0.95[CEU][hapmap];0.90[CHB][hapmap];0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs921957	0.95[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv831441	chr8:119055370-119262970	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	esv2752195	chr8:119058819-119139819	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv821660	chr8:119082062-119312183	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv891412	chr8:119107051-119139385	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119124800-119128400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:119124800-119128400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr8:119124800-119128600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr8:119124800-119136200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:119125000-119128400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr8:119125000-119128400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr8:119125000-119128400	Weak transcription	GM12878-XiMat	blood
8	chr8:119125000-119128600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr8:119125000-119128600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr8:119125000-119128600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr8:119125000-119134200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:119125200-119128600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr8:119125200-119128800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr8:119125400-119128600	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr8:119125400-119129000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr8:119125400-119129400	Enhancers	HMEC	breast
17	chr8:119125400-119138200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr8:119125600-119128600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr8:119125800-119128400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr8:119125800-119128600	Weak transcription	Thymus	Thymus
21	chr8:119125800-119132000	Weak transcription	NH-A	brain
22	chr8:119125800-119132200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr8:119125800-119132600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr8:119125800-119134800	Weak transcription	Esophagus	oesophagus
25	chr8:119125800-119149600	Weak transcription	Aorta	Aorta
26	chr8:119126000-119130200	Weak transcription	Fetal Intestine Small	intestine
27	chr8:119126200-119128600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr8:119126200-119129000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr8:119126200-119131800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr8:119126200-119137400	Weak transcription	Lung	lung
31	chr8:119126400-119128600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr8:119126400-119128600	Weak transcription	HepG2	liver
33	chr8:119126400-119130000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr8:119126400-119131200	Weak transcription	NHLF	lung
35	chr8:119126400-119131400	Weak transcription	NHDF-Ad	bronchial
36	chr8:119126400-119132000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr8:119126400-119132000	Weak transcription	Fetal Muscle Leg	muscle
38	chr8:119127800-119128600	Enhancers	Dnd41	blood
39	chr8:119127800-119129200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr8:119128000-119129000	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr8:119128000-119129200	Enhancers	NHEK	skin
42	chr8:119128200-119128600	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr8:119128200-119129000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr8:119128200-119129000	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr8:119128200-119130600	Enhancers	Primary T cells from cord blood	blood

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