Variant report

Variant	rs245180
Chromosome Location	chr5:127204314-127204315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:127203116..127205040-chr5:127209595..127211869,3	MCF-7	breast:
2	chr5:127163372..127165051-chr5:127202469..127205145,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs151849	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs151879	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs151880	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs151881	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs151882	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs151883	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs151884	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs151885	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1579284	0.80[ASN][1000 genomes]
rs181746	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs245177	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs245178	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs245179	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs245181	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs245182	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs245183	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs245186	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs245187	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs245191	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs245192	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs245193	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs245194	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs245195	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs245197	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs245198	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs245199	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs245200	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs245201	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs245310	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs245311	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs245313	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs245314	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs245327	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6864687	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127194200-127213800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:127198200-127206600	Weak transcription	NHEK	skin
3	chr5:127198400-127211600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:127199400-127206600	Weak transcription	Aorta	Aorta
5	chr5:127200600-127206600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:127203400-127205800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:127203400-127206200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr5:127203400-127206600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr5:127203400-127206600	Weak transcription	Fetal Lung	lung
10	chr5:127203400-127206600	Weak transcription	Left Ventricle	heart
11	chr5:127203400-127206800	Weak transcription	Fetal Intestine Small	intestine
12	chr5:127203400-127211400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr5:127203400-127212000	Weak transcription	Stomach Mucosa	stomach
14	chr5:127203600-127205800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr5:127203600-127206800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:127204000-127205800	Weak transcription	Hela-S3	cervix
17	chr5:127204000-127206600	Weak transcription	Psoas Muscle	Psoas
18	chr5:127204000-127211000	Weak transcription	Duodenum Mucosa	Duodenum

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