Variant report
| Variant | rs2451923 |
|---|---|
| Chromosome Location | chr10:27939955-27939956 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs1168587 | 0.81[ASN][1000 genomes] |
| rs1168592 | 0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1494196 | 0.86[ASN][1000 genomes] |
| rs1494197 | 0.86[ASN][1000 genomes] |
| rs1532315 | 0.84[ASN][1000 genomes] |
| rs1620830 | 0.83[ASN][1000 genomes] |
| rs1687721 | 0.84[ASN][1000 genomes] |
| rs1690682 | 0.86[ASN][1000 genomes] |
| rs2253055 | 0.88[EUR][1000 genomes] |
| rs2492907 | 0.86[ASN][1000 genomes] |
| rs2505135 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2637282 | 0.82[ASN][1000 genomes] |
| rs2637283 | 0.84[ASN][1000 genomes] |
| rs2642275 | 0.83[ASN][1000 genomes] |
| rs2642277 | 0.83[ASN][1000 genomes] |
| rs2642297 | 0.82[ASN][1000 genomes] |
| rs2642298 | 0.82[ASN][1000 genomes] |
| rs2642299 | 0.82[ASN][1000 genomes] |
| rs2642301 | 0.84[ASN][1000 genomes] |
| rs2808269 | 0.83[ASN][1000 genomes] |
| rs2808270 | 0.83[ASN][1000 genomes] |
| rs2808271 | 0.83[ASN][1000 genomes] |
| rs2808272 | 0.86[ASN][1000 genomes] |
| rs2808273 | 0.86[ASN][1000 genomes] |
| rs2808277 | 0.84[ASN][1000 genomes] |
| rs2815535 | 0.83[ASN][1000 genomes] |
| rs2815537 | 0.83[ASN][1000 genomes] |
| rs2815538 | 0.83[ASN][1000 genomes] |
| rs2815540 | 0.81[ASN][1000 genomes] |
| rs2815541 | 0.84[ASN][1000 genomes] |
| rs2999979 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv550241 | chr10:27569521-28025771 | Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
| 2 | esv3368825 | chr10:27864181-28043820 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv894985 | chr10:27869503-27957785 | Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv894986 | chr10:27904646-27957785 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:27933800-27963600 | Weak transcription | Ovary | ovary |
| 2 | chr10:27939200-27942200 | Weak transcription | Pancreas | Pancrea |
