Variant report

Variant	rs2453526
Chromosome Location	chr15:45760977-45760978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1145073	1.00[MEX][hapmap]
rs1153834	1.00[MEX][hapmap]
rs1153851	1.00[MEX][hapmap]
rs1295502	0.85[YRI][hapmap]
rs16941242	1.00[MEX][hapmap]
rs2246074	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2433605	1.00[MEX][hapmap]
rs2433620	0.90[YRI][hapmap]
rs2433621	0.81[LWK][hapmap];1.00[MEX][hapmap]
rs2453522	0.85[YRI][hapmap]
rs2453525	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs2467857	1.00[MEX][hapmap]
rs2467867	0.90[YRI][hapmap]
rs2486278	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2486282	0.83[LWK][hapmap];1.00[MEX][hapmap];0.84[YRI][hapmap]
rs2486289	1.00[MEX][hapmap]
rs3110166	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916374	chr15:45058112-45769052	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv932147	chr15:45319178-45872076	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv569315	chr15:45446156-45772448	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
4	nsv469721	chr15:45608881-45788002	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
5	nsv482380	chr15:45608881-45788002	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv1523	chr15:45749900-45783825	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45750800-45781000	Weak transcription	Stomach Mucosa	stomach
2	chr15:45751200-45761200	Weak transcription	Fetal Intestine Small	intestine
3	chr15:45751200-45801600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:45754200-45801600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:45756800-45761400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr15:45757000-45794600	Weak transcription	Colonic Mucosa	Colon
7	chr15:45757000-45801800	Weak transcription	Gastric	stomach
8	chr15:45759800-45768600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr15:45760000-45761000	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr15:45760200-45762400	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr15:45760400-45761000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
12	chr15:45760800-45761600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:45760800-45761800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
14	chr15:45760800-45772800	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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