Variant report

Variant	rs2455219
Chromosome Location	chr5:75922581-75922582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10035308	0.89[CHB][hapmap]
rs1697844	0.84[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap]
rs1697845	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2069641	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2431349	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2431350	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2431351	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs2431353	0.81[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs2432180	0.88[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs2455222	0.84[CEU][hapmap];0.86[CHB][hapmap]
rs2455223	0.81[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs2455224	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs2455227	0.84[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap]
rs2455228	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs2455230	0.84[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap]
rs2909890	0.87[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs2910819	0.84[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs2937415	0.84[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs410262	0.84[CEU][hapmap];0.85[JPT][hapmap]
rs416451	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs428121	0.84[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs441157	0.84[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs457233	0.87[CEU][hapmap];0.91[CHB][hapmap]
rs457717	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs465959	0.89[CHB][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1031881	chr5:75917033-75946265	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75879000-75934000	Weak transcription	Small Intestine	intestine
2	chr5:75880200-75933400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr5:75882600-75969400	Weak transcription	Stomach Mucosa	stomach
4	chr5:75903800-75936200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:75903800-75943600	Weak transcription	Spleen	Spleen
6	chr5:75907600-75923000	Weak transcription	Placenta	Placenta
7	chr5:75907800-75934600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr5:75908000-75928000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr5:75909000-75923200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr5:75909200-75923000	Weak transcription	Lung	lung
11	chr5:75911200-75923000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr5:75913400-75934600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr5:75914200-75953800	Weak transcription	Colonic Mucosa	Colon
14	chr5:75914400-75922600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr5:75914400-75922600	Weak transcription	Gastric	stomach
16	chr5:75914400-75922800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr5:75914400-75932800	Weak transcription	HepG2	liver
18	chr5:75915000-75923000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr5:75915000-75923200	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr5:75915000-75923400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr5:75916800-75923200	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr5:75918000-75943400	Weak transcription	Fetal Intestine Small	intestine
23	chr5:75918200-75922600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr5:75918200-75943600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr5:75918400-75927200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr5:75918400-75927800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr5:75919000-75923200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr5:75919200-75922600	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr5:75919200-75923200	Weak transcription	Primary T cells from cord blood	blood
30	chr5:75919200-75926000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr5:75919200-75943600	Weak transcription	Fetal Intestine Large	intestine
32	chr5:75919200-75955400	Weak transcription	Fetal Kidney	kidney
33	chr5:75919400-75922600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr5:75919400-75928200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr5:75919400-75938200	Weak transcription	Pancreas	Pancrea
36	chr5:75919400-75944200	Weak transcription	Fetal Lung	lung
37	chr5:75919600-75926000	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr5:75920200-75923800	Weak transcription	Primary B cells from cord blood	blood
39	chr5:75921200-75922800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
40	chr5:75921200-75923000	Enhancers	Fetal Thymus	thymus
41	chr5:75921600-75922600	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr5:75921600-75922600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr5:75921600-75922600	Weak transcription	Adipose Nuclei	Adipose
44	chr5:75921600-75922800	Weak transcription	Fetal Stomach	stomach
45	chr5:75921600-75926000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr5:75921600-75938000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr5:75921800-75923000	Enhancers	Primary hematopoietic stem cells	blood
48	chr5:75921800-75924000	Weak transcription	K562	blood
49	chr5:75921800-75926000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr5:75922000-75931000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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