Variant report

Variant	rs2455413
Chromosome Location	chr13:38962265-38962266
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1011484	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10507469	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10507470	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11693	1.00[CHD][hapmap]
rs1330964	1.00[CHD][hapmap]
rs1330965	1.00[CHD][hapmap]
rs1553300	1.00[CHD][hapmap]
rs1590952	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17057355	1.00[CHB][hapmap]
rs17057710	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17057848	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17057900	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2019516	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2150468	1.00[CHD][hapmap]
rs2173948	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2231320	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2231328	1.00[CHD][hapmap]
rs2231335	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2231336	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455408	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455409	1.00[ASW][hapmap]
rs2481877	1.00[CHD][hapmap]
rs2481880	1.00[CHD][hapmap]
rs2481887	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2481888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2481892	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2485779	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485783	1.00[CHD][hapmap]
rs2496468	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943583	1.00[CHD][hapmap]
rs56306542	1.00[ASN][1000 genomes]
rs7322186	1.00[ASN][1000 genomes]
rs73460283	1.00[ASN][1000 genomes]
rs74047550	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74047551	1.00[EUR][1000 genomes]
rs74047552	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74047553	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74047554	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9532209	1.00[CHD][hapmap]
rs9532217	1.00[ASN][1000 genomes]
rs9548318	1.00[CHD][hapmap]
rs9548328	1.00[ASN][1000 genomes]
rs9888482	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv900006	chr13:38924871-38970825	Genic enhancers ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1041977	chr13:38962265-39002924	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38957200-38962400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:38959400-38962600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr13:38959600-38962600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr13:38961200-38968800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr13:38961200-38968800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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