Variant report

Variant	rs2456041
Chromosome Location	chr15:76499846-76499847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1810347	1.00[EUR][1000 genomes]
rs2037306	0.82[AFR][1000 genomes]
rs937731	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1054713	chr15:76460462-76505906	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76484000-76500800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr15:76486800-76503000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:76486800-76516600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr15:76489400-76502800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:76489400-76519800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr15:76489600-76500000	Weak transcription	Fetal Lung	lung
7	chr15:76489600-76501800	Weak transcription	GM12878-XiMat	blood
8	chr15:76489600-76503000	Weak transcription	Small Intestine	intestine
9	chr15:76490000-76503600	Weak transcription	HUVEC	blood vessel
10	chr15:76490400-76501600	Weak transcription	Primary B cells from cord blood	blood
11	chr15:76491200-76500600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr15:76491400-76502800	Weak transcription	HMEC	breast
13	chr15:76491800-76500400	Weak transcription	Primary B cells from peripheral blood	blood
14	chr15:76492000-76500000	Weak transcription	Fetal Muscle Leg	muscle
15	chr15:76492000-76500000	Weak transcription	HepG2	liver
16	chr15:76492000-76500400	Weak transcription	Colonic Mucosa	Colon
17	chr15:76492000-76500400	Weak transcription	Right Atrium	heart
18	chr15:76492000-76502000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:76492000-76502000	Weak transcription	Aorta	Aorta
20	chr15:76492000-76502000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr15:76492000-76503600	Weak transcription	NHDF-Ad	bronchial
22	chr15:76492000-76509600	Weak transcription	K562	blood
23	chr15:76492400-76503200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr15:76492400-76503200	Weak transcription	NHLF	lung
25	chr15:76492400-76503200	Weak transcription	Osteobl	bone
26	chr15:76492400-76510000	Strong transcription	Placenta	Placenta
27	chr15:76492600-76501200	Weak transcription	HSMM	muscle
28	chr15:76492600-76507000	Weak transcription	NH-A	brain
29	chr15:76492800-76500000	Strong transcription	Fetal Intestine Small	intestine
30	chr15:76492800-76506200	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr15:76492800-76517600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr15:76492800-76526400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr15:76493000-76504200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:76493200-76507800	Strong transcription	Fetal Stomach	stomach
35	chr15:76493400-76500400	Weak transcription	Fetal Thymus	thymus
36	chr15:76493400-76504400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr15:76493600-76501000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr15:76493600-76506800	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr15:76493600-76526400	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr15:76494600-76510400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr15:76495400-76510400	Strong transcription	Adipose Nuclei	Adipose
42	chr15:76495800-76501600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr15:76495800-76501600	Weak transcription	Dnd41	blood
44	chr15:76495800-76508600	Strong transcription	A549	lung
45	chr15:76496200-76503000	Weak transcription	HSMMtube	muscle
46	chr15:76496200-76510400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr15:76496400-76500000	Weak transcription	Thymus	Thymus
48	chr15:76496400-76502400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr15:76496800-76500000	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr15:76497000-76518200	Strong transcription	Duodenum Mucosa	Duodenum

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