Variant report

Variant	rs2456532
Chromosome Location	chr15:53092520-53092521
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10518694	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs2120450	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs2243790	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2440322	0.91[EUR][1000 genomes]
rs2440375	0.89[CEU][hapmap]
rs2440376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2456507	0.89[CEU][hapmap];0.93[EUR][1000 genomes]
rs2456522	0.96[EUR][1000 genomes]
rs2456524	0.96[EUR][1000 genomes]
rs2456525	0.92[EUR][1000 genomes]
rs2456526	0.89[CEU][hapmap];0.96[EUR][1000 genomes]
rs2456529	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2456530	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28475375	0.85[EUR][1000 genomes]
rs60065065	0.93[EUR][1000 genomes]
rs7180600	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1041421	chr15:52661342-53148286	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1046970	chr15:53065114-53142386	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a
4	nsv569428	chr15:53069874-53140045	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53090800-53092800	Bivalent Enhancer	HepG2	liver
2	chr15:53091400-53094200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:53091400-53095400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
4	chr15:53091400-53095600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:53091600-53095400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
6	chr15:53091800-53092800	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
7	chr15:53091800-53092800	Bivalent Enhancer	Duodenum Mucosa	Duodenum
8	chr15:53092000-53094200	Enhancers	Liver	Liver
9	chr15:53092200-53092600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
10	chr15:53092200-53094200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
11	chr15:53092400-53092600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
12	chr15:53092400-53092800	Bivalent Enhancer	Primary T cells from cord blood	blood
13	chr15:53092400-53094200	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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