Variant report

Variant	rs2457213
Chromosome Location	chr10:50016800-50016801
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50011096..50015039-chr10:50015649..50020097,7	MCF-7	breast:
2	chr10:50016415..50019036-chr10:50020234..50023570,4	MCF-7	breast:
3	chr10:50011301..50013130-chr10:50016318..50018256,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2940732	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3446258	chr10:50015246-50019644	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50005200-50026800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:50007200-50017200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr10:50009600-50028000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:50011600-50017000	Enhancers	Fetal Stomach	stomach
5	chr10:50012800-50016800	Enhancers	NHEK	skin
6	chr10:50013200-50023800	Strong transcription	GM12878-XiMat	blood
7	chr10:50013600-50028200	Strong transcription	Primary B cells from peripheral blood	blood
8	chr10:50013600-50061000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:50014200-50017200	Weak transcription	Pancreas	Pancrea
10	chr10:50014200-50017400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:50014200-50030000	Weak transcription	Right Atrium	heart
12	chr10:50014600-50016800	Enhancers	Primary T cells from cord blood	blood
13	chr10:50014600-50017000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:50014600-50017600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr10:50014600-50019400	Weak transcription	Brain Substantia Nigra	brain
16	chr10:50014600-50019800	Weak transcription	Left Ventricle	heart
17	chr10:50014600-50020800	Strong transcription	Primary hematopoietic stem cells	blood
18	chr10:50014600-50021800	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:50014800-50017200	Weak transcription	Lung	lung
20	chr10:50014800-50017400	Weak transcription	Brain Angular Gyrus	brain
21	chr10:50014800-50018600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr10:50014800-50019600	Weak transcription	NHLF	lung
23	chr10:50014800-50020600	Weak transcription	Adipose Nuclei	Adipose
24	chr10:50014800-50020800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:50014800-50020800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:50015000-50018400	Weak transcription	Fetal Muscle Trunk	muscle
27	chr10:50015000-50023000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr10:50015200-50063400	Strong transcription	Primary B cells from cord blood	blood
29	chr10:50015600-50023200	Weak transcription	Rectal Smooth Muscle	rectum
30	chr10:50015600-50029800	Weak transcription	Gastric	stomach
31	chr10:50016000-50017400	Enhancers	Fetal Lung	lung
32	chr10:50016200-50063000	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr10:50016200-50063000	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr10:50016400-50017000	Enhancers	Fetal Muscle Leg	muscle
35	chr10:50016400-50019000	Weak transcription	Aorta	Aorta
36	chr10:50016600-50018800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr10:50016600-50019000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr10:50016600-50019600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:50016600-50022800	Strong transcription	Spleen	Spleen
40	chr10:50016600-50062400	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr10:50016800-50018800	Weak transcription	Primary T cells from cord blood	blood
42	chr10:50016800-50019000	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links