Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1553938	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2036964	0.96[ASN][1000 genomes]
rs2458325	0.89[ASN][1000 genomes]
rs2458326	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2458335	0.86[ASN][1000 genomes]
rs2458336	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2458339	0.82[ASN][1000 genomes]
rs2458340	0.84[ASN][1000 genomes]
rs2458342	0.84[ASN][1000 genomes]
rs2458346	0.96[ASN][1000 genomes]
rs2513601	0.96[ASN][1000 genomes]
rs2513602	0.99[ASN][1000 genomes]
rs2513608	0.84[ASN][1000 genomes]
rs2513609	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2513610	0.86[ASN][1000 genomes]
rs2942229	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2942230	0.94[ASN][1000 genomes]
rs907648	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs953816	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs975377	0.98[ASN][1000 genomes]
rs975392	0.91[ASN][1000 genomes]
rs975393	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs975394	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs975395	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs994791	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1054471	chr11:106168484-106427713	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2458327	C11orf70	cis	parietal	SCAN
rs2458327	MMP12	cis	parietal	SCAN
rs2458327	DYNC2H1	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106286600-106295600	Weak transcription	Pancreas	Pancrea
2	chr11:106288000-106294400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:106290600-106291400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:106290800-106291400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:106291000-106291400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:106291000-106291800	Enhancers	NHEK	skin
7	chr11:106291200-106291600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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