Variant report

Variant	rs2458416
Chromosome Location	chr8:105351467-105351468
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:105351038-105351480	U87	brain:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TM7SF4-1	chr8:105351315-105351693	NONHSAT128207

Variant related genes	Relation type
DCSTAMP	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1447064	1.00[LWK][hapmap]
rs1533243	0.84[AMR][1000 genomes]
rs3018437	1.00[ASW][hapmap]
rs6996424	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1032775	chr8:105311364-105409972	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105343200-105354400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:105348000-105351800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr8:105349000-105352000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr8:105349000-105352600	Enhancers	Osteobl	bone
5	chr8:105349400-105352400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr8:105349400-105358800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr8:105349600-105351600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:105349600-105358200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr8:105349800-105352400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr8:105349800-105352600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr8:105350400-105352600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr8:105350600-105352200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr8:105350600-105352600	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr8:105350600-105352600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr8:105350800-105351800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:105350800-105351800	Enhancers	Placenta Amnion	Placenta Amnion
17	chr8:105350800-105351800	Enhancers	NHDF-Ad	bronchial
18	chr8:105350800-105352000	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr8:105351000-105351600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr8:105351000-105351800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr8:105351000-105351800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:105351000-105351800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr8:105351000-105351800	Enhancers	NH-A	brain
24	chr8:105351000-105352000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr8:105351000-105353000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr8:105351200-105351600	Weak transcription	Right Atrium	heart
27	chr8:105351200-105351800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr8:105351200-105352200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr8:105351400-105351600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr8:105351400-105352200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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