Variant report

Variant	rs2458928
Chromosome Location	chr11:36469814-36469815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:36469566..36471413-chr11:36472825..36475082,2	MCF-7	breast:
2	chr11:36469765..36471660-chr11:36474085..36476889,2	K562	blood:
3	chr11:36469765..36471992-chr11:36474085..36476889,3	K562	blood:

Variant related genes	Relation type
ENSG00000135362	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11033622	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11033623	0.86[ASN][1000 genomes]
rs12281565	0.86[ASN][1000 genomes]
rs2458927	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7128641	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1046452	chr11:36460958-36503079	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv518499	chr11:36466814-36479789	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36400200-36475400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:36413000-36471000	Weak transcription	Aorta	Aorta
3	chr11:36414800-36475600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr11:36433800-36471400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr11:36444000-36471400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:36444200-36471400	Weak transcription	Small Intestine	intestine
7	chr11:36447600-36471000	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr11:36448400-36470600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr11:36448600-36470600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:36448600-36471000	Weak transcription	Fetal Thymus	thymus
11	chr11:36448600-36471000	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr11:36448800-36471400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr11:36449200-36471400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr11:36449400-36471200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr11:36449400-36471200	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr11:36449600-36474000	Weak transcription	Right Ventricle	heart
17	chr11:36452400-36470600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr11:36452800-36473800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:36453400-36471200	Strong transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:36453600-36471200	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr11:36454800-36473600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:36455800-36473800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr11:36456600-36470800	Strong transcription	Fetal Intestine Large	intestine
24	chr11:36457400-36471400	Weak transcription	Stomach Mucosa	stomach
25	chr11:36461600-36472600	Weak transcription	NH-A	brain
26	chr11:36462000-36471400	Weak transcription	Liver	Liver
27	chr11:36463000-36474000	Weak transcription	Fetal Kidney	kidney
28	chr11:36463600-36470200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr11:36463600-36470600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:36463600-36471400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr11:36463600-36471600	Weak transcription	Left Ventricle	heart
32	chr11:36464200-36470800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr11:36464400-36478800	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr11:36464600-36471600	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr11:36464800-36470400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr11:36465400-36471400	Weak transcription	Brain Angular Gyrus	brain
37	chr11:36465800-36471600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:36466800-36470400	Weak transcription	HUVEC	blood vessel
39	chr11:36467400-36470600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:36467400-36471400	Strong transcription	Colonic Mucosa	Colon
41	chr11:36467600-36470400	Strong transcription	Fetal Intestine Small	intestine
42	chr11:36467600-36470600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr11:36467600-36471200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr11:36467600-36471400	Genic enhancers	Spleen	Spleen
45	chr11:36467800-36470200	Strong transcription	Primary hematopoietic stem cells	blood
46	chr11:36467800-36470200	Strong transcription	Brain Hippocampus Middle	brain
47	chr11:36467800-36470200	Strong transcription	Duodenum Mucosa	Duodenum
48	chr11:36467800-36470400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr11:36467800-36471800	Enhancers	Pancreas	Pancrea
50	chr11:36467800-36478800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links