Variant report

Variant	rs2459964
Chromosome Location	chr8:95936375-95936376
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95935684..95938167-chr8:96034752..96038449,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156170	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1017634	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956930	0.83[AFR][1000 genomes]
rs1971212	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2013995	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2253173	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2459963	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2459965	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2466431	0.92[ASN][1000 genomes]
rs2467672	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467673	0.95[ASN][1000 genomes]
rs2467674	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467675	0.97[ASN][1000 genomes]
rs2467676	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2515235	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515237	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2945554	0.90[AFR][1000 genomes]
rs36118131	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4570121	0.83[AFR][1000 genomes]
rs4735330	0.83[AFR][1000 genomes]
rs6987400	0.83[AFR][1000 genomes]
rs7001535	0.83[AFR][1000 genomes]
rs7760	0.97[ASN][1000 genomes]
rs896849	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9643352	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv891203	chr8:95883232-95948202	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv891204	chr8:95883232-95965135	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95909400-95939000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr8:95909400-95941000	Weak transcription	Ovary	ovary
3	chr8:95909400-95941200	Weak transcription	Fetal Stomach	stomach
4	chr8:95909600-95937000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:95909600-95938400	Weak transcription	Primary T cells from cord blood	blood
6	chr8:95909600-95941800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr8:95909800-95940600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr8:95910000-95940200	Weak transcription	Thymus	Thymus
9	chr8:95910800-95940200	Weak transcription	Hela-S3	cervix
10	chr8:95918000-95940200	Weak transcription	Brain Anterior Caudate	brain
11	chr8:95918600-95947400	Weak transcription	Small Intestine	intestine
12	chr8:95919000-95941200	Weak transcription	Left Ventricle	heart
13	chr8:95919200-95948600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:95920200-95938400	Weak transcription	NHDF-Ad	bronchial
15	chr8:95920400-95938000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:95921200-95936600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr8:95926200-95939600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr8:95926200-95946400	Weak transcription	Stomach Mucosa	stomach
19	chr8:95926400-95941200	Weak transcription	Pancreas	Pancrea
20	chr8:95927000-95940400	Weak transcription	Lung	lung
21	chr8:95928400-95936800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr8:95928600-95938600	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr8:95928600-95939000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr8:95928600-95939600	Weak transcription	Fetal Intestine Large	intestine
25	chr8:95928600-95939600	Weak transcription	Dnd41	blood
26	chr8:95928600-95940200	Weak transcription	Fetal Kidney	kidney
27	chr8:95928600-95940200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr8:95928600-95941200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr8:95928600-95941200	Weak transcription	Fetal Intestine Small	intestine
30	chr8:95928800-95937200	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr8:95928800-95939800	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr8:95929800-95940600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr8:95930200-95941800	Weak transcription	Spleen	Spleen
34	chr8:95930600-95936800	Weak transcription	Fetal Muscle Leg	muscle
35	chr8:95930600-95937400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr8:95930600-95938400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr8:95930600-95939800	Weak transcription	Fetal Lung	lung
38	chr8:95930600-95940800	Weak transcription	Aorta	Aorta
39	chr8:95930600-95948600	Weak transcription	Gastric	stomach
40	chr8:95930800-95937400	Weak transcription	Adipose Nuclei	Adipose
41	chr8:95931000-95937400	Weak transcription	Duodenum Mucosa	Duodenum
42	chr8:95931200-95936800	Weak transcription	Fetal Muscle Trunk	muscle
43	chr8:95931800-95950000	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr8:95932000-95940400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr8:95932200-95936800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr8:95932200-95937200	Weak transcription	Placenta	Placenta
47	chr8:95932400-95940600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr8:95932800-95940200	Weak transcription	HSMMtube	muscle
49	chr8:95933000-95937200	Weak transcription	Fetal Thymus	thymus
50	chr8:95933000-95939600	Weak transcription	HSMM	muscle

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