Variant report

Variant	rs2460421
Chromosome Location	chr7:65491123-65491124
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 12 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1701751	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761079	chr7:65092426-65689733	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
3	nsv1025494	chr7:65402301-65515606	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv538906	chr7:65402301-65515606	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv888325	chr7:65474919-65575893	Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	esv3370332	chr7:65489217-65491915	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3445852	chr7:65489667-65491765	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:12)

SNP	Gene	Cis/trans	Tissue	Source
rs2460421	GTF2IRD1P1	cis	Thyroid	GTEx
rs2460421	RP4-756H11.3	cis	Nerve Tibial	GTEx
rs2460421	RP4-756H11.3	cis	Esophagus Mucosa	GTEx
rs2460421	RP4-756H11.3	cis	Adipose Subcutaneous	GTEx
rs2460421	RP4-756H11.3	cis	Artery Tibial	GTEx
rs2460421	RP4-756H11.3	cis	Artery Aorta	GTEx
rs2460421	RP4-756H11.3	cis	lung	GTEx
rs2460421	CRCP,ASL	cis	brain	BrainEAC
rs2460421	RP4-756H11.3	cis	Skin Sun Exposed Lower leg	GTEx
rs2460421	RP4-756H11.3	cis	Heart Left Ventricle	GTEx
rs2460421	RP4-756H11.3	cis	Esophagus Muscularis	GTEx
rs2460421	RP4-756H11.3	cis	Thyroid	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65489000-65497400	Weak transcription	Liver	Liver
2	chr7:65491000-65493200	Weak transcription	Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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