Variant report
| Variant | rs2464576 |
|---|---|
| Chromosome Location | chr8:118220189-118220190 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs2464574 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2464577 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2464578 | 0.87[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2464579 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2464582 | 0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2464583 | 0.87[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2464586 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2464591 | 0.83[EUR][1000 genomes] |
| rs2464597 | 0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2466290 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2466296 | 0.88[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs2466297 | 0.88[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs2466299 | 0.88[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs2466300 | 0.83[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs2466310 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2466313 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2466314 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2466315 | 0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2466316 | 0.96[EUR][1000 genomes] |
| rs2466321 | 0.87[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2466323 | 0.87[AFR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2466324 | 0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530386 | chr8:117509968-118391406 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| 2 | nsv1031711 | chr8:118134669-118322562 | Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1027039 | chr8:118143762-118460954 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:118217600-118225600 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
