Variant report
| Variant | rs246464 |
|---|---|
| Chromosome Location | chr7:78445408-78445409 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs1012955 | 0.87[CEU][hapmap] |
| rs10244070 | 0.87[CEU][hapmap] |
| rs10953690 | 0.87[CEU][hapmap] |
| rs1207863 | 0.87[CEU][hapmap] |
| rs1207864 | 0.87[CEU][hapmap] |
| rs1207865 | 0.87[CEU][hapmap] |
| rs1207866 | 0.87[CEU][hapmap] |
| rs1207867 | 0.87[CEU][hapmap] |
| rs1207894 | 0.87[CEU][hapmap] |
| rs12705771 | 0.87[CEU][hapmap] |
| rs17151530 | 1.00[CEU][hapmap] |
| rs1989977 | 0.87[CEU][hapmap] |
| rs1989978 | 0.86[CEU][hapmap] |
| rs246463 | 1.00[CEU][hapmap];0.96[YRI][hapmap] |
| rs2525808 | 0.87[CEU][hapmap] |
| rs2774059 | 0.86[CEU][hapmap] |
| rs37847 | 0.87[CEU][hapmap] |
| rs37848 | 0.87[CEU][hapmap] |
| rs37850 | 0.87[CEU][hapmap] |
| rs37860 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes] |
| rs37862 | 1.00[CEU][hapmap] |
| rs37863 | 1.00[CEU][hapmap] |
| rs37865 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs37868 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs37871 | 1.00[CEU][hapmap] |
| rs37872 | 1.00[CEU][hapmap];0.94[GIH][hapmap];0.84[EUR][1000 genomes] |
| rs37873 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs37875 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes] |
| rs37877 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs37881 | 0.85[EUR][1000 genomes] |
| rs37882 | 0.93[EUR][1000 genomes] |
| rs37884 | 1.00[CEU][hapmap];0.94[GIH][hapmap];0.84[EUR][1000 genomes] |
| rs37887 | 0.87[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs39731 | 1.00[CEU][hapmap];0.94[GIH][hapmap] |
| rs73369408 | 0.90[ASN][1000 genomes] |
| rs7780363 | 0.87[CEU][hapmap] |
| rs886472 | 0.87[CEU][hapmap] |
| rs886473 | 0.87[CEU][hapmap] |
| rs886474 | 0.87[CEU][hapmap] |
| rs970757 | 0.87[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1022199 | chr7:78054639-78469370 | Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv538986 | chr7:78054639-78469370 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv607657 | chr7:78329795-78483211 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv949647 | chr7:78406281-78495913 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv1024961 | chr7:78432257-78483201 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
