Variant report

Variant	rs2465513
Chromosome Location	chr7:79339063-79339064
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:79338433..79339397-chr7:152133508..152134213,2	HCT-116	colon:

Variant related genes	Relation type
ENSG00000241735	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10953921	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13221318	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1474341	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1523833	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1523845	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1523846	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1608514	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17152798	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1916739	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2251961	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2256099	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2256380	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2256393	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2462129	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2689784	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2689785	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2689787	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2689788	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2714647	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2714649	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2714651	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2714686	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2714687	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2714688	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2714689	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2714703	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34247718	0.92[ASN][1000 genomes]
rs4425691	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4484626	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4580983	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7807153	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2758121	chr7:79261464-79427646	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2759540	chr7:79261464-79427646	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv607670	chr7:79310586-79434743	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv464602	chr7:79315761-79402551	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv607671	chr7:79315761-79402551	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1016075	chr7:79316477-79404957	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1033114	chr7:79317818-79408713	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv607672	chr7:79319930-79367667	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
11	nsv607673	chr7:79319930-79368072	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
12	nsv607674	chr7:79319930-79394881	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1020043	chr7:79320516-79401875	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv1018854	chr7:79320516-79404957	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv1025266	chr7:79320516-79408713	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv1023653	chr7:79320516-79410073	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79338200-79339600	Enhancers	HUVEC	blood vessel
2	chr7:79338800-79339200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:79338800-79339400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:79338800-79339600	Enhancers	Osteobl	bone
5	chr7:79339000-79339400	Enhancers	Hela-S3	cervix
6	chr7:79339000-79339600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:79339000-79339600	Enhancers	NH-A	brain
8	chr7:79339000-79339800	Enhancers	Rectal Mucosa Donor 31	rectum

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