Variant report

Variant	rs2466291
Chromosome Location	chr8:118190393-118190394
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10101934	0.88[ASN][1000 genomes]
rs13267156	0.82[ASN][1000 genomes]
rs2464573	0.92[ASN][1000 genomes]
rs2464591	0.97[ASN][1000 genomes]
rs2464592	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2466292	0.89[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2466294	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2466295	0.87[ASW][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.87[MKK][hapmap];0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2466296	0.91[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs2466297	0.91[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs2466298	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2466299	0.91[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.95[ASN][1000 genomes]
rs2466300	0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs2466309	0.91[ASN][1000 genomes]
rs2466311	0.91[ASN][1000 genomes]
rs2466318	0.95[ASN][1000 genomes]
rs2466320	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1031711	chr8:118134669-118322562	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1027039	chr8:118143762-118460954	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118188800-118197200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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