Variant report

Variant	rs2466739
Chromosome Location	chr8:78996893-78996894
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13248211	0.88[EUR][1000 genomes]
rs2448961	0.85[ASN][1000 genomes]
rs2448962	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2448965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2466736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2466737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7832177	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs901482	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:78995600-78997200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr8:78995600-78997200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr8:78995600-78997600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:78995800-78997200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:78995800-78997200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr8:78996000-78997000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:78996200-78997000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:78996200-78997000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr8:78996200-78997000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr8:78996200-78997200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:78996400-78997000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr8:78996400-78997000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr8:78996400-78997000	Enhancers	Colon Smooth Muscle	Colon
14	chr8:78996400-78997000	Enhancers	Rectal Smooth Muscle	rectum
15	chr8:78996400-78997200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr8:78996400-78997200	Enhancers	Osteobl	bone
17	chr8:78996600-78997000	Enhancers	Stomach Smooth Muscle	stomach
18	chr8:78996600-78997200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:78996600-78997200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr8:78996600-78997200	Enhancers	Fetal Lung	lung
21	chr8:78996800-78997200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:78996800-79004200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr8:78996800-79004200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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