Variant report

Variant	rs2468151
Chromosome Location	chr8:119103081-119103082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119099935..119103110-chr8:119103633..119107379,3	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10091500	1.00[CEU][hapmap]
rs2451131	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2514738	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7826515	1.00[CEU][hapmap];0.85[GIH][hapmap];0.94[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv831441	chr8:119055370-119262970	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	esv2752195	chr8:119058819-119139819	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv821660	chr8:119082062-119312183	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119092400-119104800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:119092600-119110200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:119094200-119117000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr8:119094400-119110200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:119097600-119113400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:119098800-119117800	Weak transcription	Brain Germinal Matrix	brain
7	chr8:119099400-119109800	Weak transcription	Brain Anterior Caudate	brain
8	chr8:119100200-119108400	Genic enhancers	Osteobl	bone
9	chr8:119100400-119110000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr8:119100600-119106200	Weak transcription	Aorta	Aorta
11	chr8:119100600-119109800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr8:119101200-119110000	Weak transcription	Fetal Brain Female	brain
13	chr8:119101600-119103200	Flanking Active TSS	Dnd41	blood
14	chr8:119101800-119103200	Enhancers	Fetal Thymus	thymus
15	chr8:119101800-119103400	Enhancers	Psoas Muscle	Psoas
16	chr8:119101800-119103600	Enhancers	Small Intestine	intestine
17	chr8:119101800-119103600	Enhancers	HepG2	liver
18	chr8:119102000-119103200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr8:119102000-119103200	Enhancers	NHLF	lung
20	chr8:119102000-119103400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr8:119102000-119103400	Enhancers	Lung	lung
22	chr8:119102000-119103400	Enhancers	Spleen	Spleen
23	chr8:119102000-119103600	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr8:119102000-119119600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr8:119102200-119103200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr8:119102200-119103200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
27	chr8:119102200-119103200	Enhancers	Right Atrium	heart
28	chr8:119102200-119103400	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr8:119102200-119103400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr8:119102200-119103400	Enhancers	Thymus	Thymus
31	chr8:119102200-119104800	Weak transcription	Fetal Heart	heart
32	chr8:119102200-119106000	Weak transcription	HSMMtube	muscle
33	chr8:119102200-119111800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr8:119102400-119103200	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr8:119102400-119103200	Enhancers	NHDF-Ad	bronchial
36	chr8:119102400-119103400	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr8:119102400-119103400	Enhancers	Duodenum Mucosa	Duodenum
38	chr8:119102400-119103400	Enhancers	Left Ventricle	heart
39	chr8:119102400-119103400	Enhancers	Rectal Mucosa Donor 29	rectum
40	chr8:119102400-119103400	Enhancers	HUVEC	blood vessel
41	chr8:119102400-119103600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr8:119102400-119103600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr8:119102400-119103600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr8:119102400-119103600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr8:119102400-119103600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr8:119102400-119103600	Genic enhancers	Liver	Liver
47	chr8:119102400-119103800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr8:119102400-119103800	Enhancers	Primary T cells fromperipheralblood	blood
49	chr8:119102400-119104000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr8:119102400-119106800	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links