Variant report

Variant	rs2468537
Chromosome Location	chr5:36463088-36463089
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2455270	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2455271	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2455272	0.95[ASN][1000 genomes]
rs2468507	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2468508	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2468510	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2468513	0.95[ASN][1000 genomes]
rs2468516	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2468517	0.95[ASN][1000 genomes]
rs2468518	0.95[ASN][1000 genomes]
rs2937558	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2956572	0.95[ASN][1000 genomes]
rs72730760	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv597819	chr5:36445458-36472990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1016667	chr5:36448895-36464362	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2763449	chr5:36448895-36464374	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv597820	chr5:36452065-36463088	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36457800-36468000	Weak transcription	Fetal Heart	heart
2	chr5:36461800-36464200	Enhancers	HMEC	breast
3	chr5:36462000-36464000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:36462000-36464000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:36462000-36464200	Enhancers	NHEK	skin
6	chr5:36462000-36464400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:36462200-36463200	Enhancers	Hela-S3	cervix
8	chr5:36462200-36463200	Enhancers	Osteobl	bone
9	chr5:36462200-36463400	Enhancers	HSMM	muscle
10	chr5:36462200-36463800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:36462400-36463200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr5:36462400-36463200	Enhancers	HSMMtube	muscle
13	chr5:36462400-36463400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr5:36462600-36463200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr5:36462800-36463200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr5:36462800-36463200	Enhancers	Esophagus	oesophagus
17	chr5:36462800-36463200	Enhancers	Fetal Thymus	thymus
18	chr5:36463000-36463200	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
19	chr5:36463000-36463200	ZNF genes & repeats	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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