Variant report

Variant	rs2468743
Chromosome Location	chr15:33429255-33429256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33358754..33360728-chr15:33427893..33429742,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248905	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11072253	0.86[ASN][1000 genomes]
rs11072255	0.89[ASN][1000 genomes]
rs11629551	0.86[ASN][1000 genomes]
rs11629580	0.86[ASN][1000 genomes]
rs11629582	0.88[ASN][1000 genomes]
rs11635767	0.86[ASN][1000 genomes]
rs12442498	0.95[ASN][1000 genomes]
rs12901347	0.84[ASN][1000 genomes]
rs12901350	0.84[ASN][1000 genomes]
rs12903383	0.86[ASN][1000 genomes]
rs2444969	0.81[EUR][1000 genomes]
rs2444972	0.81[EUR][1000 genomes]
rs2444973	0.81[EUR][1000 genomes]
rs2444974	0.81[EUR][1000 genomes]
rs2444975	0.81[EUR][1000 genomes]
rs2468756	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4779607	0.85[ASN][1000 genomes]
rs4779608	0.85[ASN][1000 genomes]
rs4779609	0.85[ASN][1000 genomes]
rs4779610	0.85[ASN][1000 genomes]
rs4780086	0.90[ASN][1000 genomes]
rs71424694	0.82[ASN][1000 genomes]
rs7164682	0.84[ASN][1000 genomes]
rs7165173	0.85[ASN][1000 genomes]
rs7165347	0.82[ASN][1000 genomes]
rs7180763	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv568918	chr15:33244672-33446971	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv903983	chr15:33388030-33550256	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33419200-33430000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr15:33419200-33430400	Weak transcription	Psoas Muscle	Psoas
3	chr15:33420600-33434800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:33424400-33430000	Weak transcription	Fetal Lung	lung
5	chr15:33424400-33440600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:33424600-33429800	Weak transcription	Brain Angular Gyrus	brain
7	chr15:33425000-33430000	Weak transcription	Fetal Stomach	stomach
8	chr15:33425400-33430000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr15:33425600-33430200	Weak transcription	Brain Substantia Nigra	brain
10	chr15:33427200-33431400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr15:33427600-33429800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr15:33427800-33430000	Weak transcription	Fetal Muscle Leg	muscle
13	chr15:33427800-33445400	Weak transcription	Right Atrium	heart
14	chr15:33428000-33429400	Weak transcription	Brain Hippocampus Middle	brain
15	chr15:33428000-33429400	Weak transcription	Left Ventricle	heart
16	chr15:33428200-33429400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr15:33428200-33429400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr15:33428200-33430000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:33428400-33430000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr15:33428400-33430000	Weak transcription	HSMM	muscle
21	chr15:33428600-33429600	Weak transcription	Adipose Nuclei	Adipose
22	chr15:33428600-33430200	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr15:33428800-33429400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr15:33428800-33429800	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr15:33428800-33430000	Weak transcription	NHLF	lung
26	chr15:33429200-33430800	Enhancers	Skeletal Muscle Female	skeletal muscle

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