Variant report

Variant	rs2468758
Chromosome Location	chr15:33438052-33438053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1454987	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs2085180	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs2257131	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs2444962	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2444976	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2444979	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2444981	0.95[ASN][1000 genomes]
rs2444982	0.86[JPT][hapmap]
rs2468741	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs2468751	0.91[ASN][1000 genomes]
rs2468759	0.99[ASN][1000 genomes]
rs4350544	0.86[JPT][hapmap]
rs4780082	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs5002280	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv568918	chr15:33244672-33446971	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv903983	chr15:33388030-33550256	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	esv2763091	chr15:33435045-33439414	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33424400-33440600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:33427800-33445400	Weak transcription	Right Atrium	heart
3	chr15:33435000-33438400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:33435800-33442200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr15:33436200-33438600	Weak transcription	Fetal Intestine Small	intestine
6	chr15:33436600-33438200	Weak transcription	Fetal Intestine Large	intestine
7	chr15:33437200-33438600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr15:33437200-33438600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:33437200-33438600	Enhancers	NHEK	skin
10	chr15:33437200-33438800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:33437200-33438800	Enhancers	HMEC	breast
12	chr15:33437200-33439000	Enhancers	Placenta	Placenta
13	chr15:33437400-33438400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:33437600-33438400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr15:33437800-33438200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr15:33438000-33438400	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr15:33438000-33440200	Weak transcription	Fetal Kidney	kidney
18	chr15:33438000-33440600	Weak transcription	Esophagus	oesophagus
19	chr15:33438000-33442000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links