Variant report

Variant	rs2469213
Chromosome Location	chr15:76602406-76602407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:76589441..76591088-chr15:76601198..76602843,2	K562	blood:
2	chr15:76582923..76594852-chr15:76601949..76606997,18	MCF-7	breast:
3	chr15:76517181..76519721-chr15:76602211..76604425,2	K562	blood:
4	chr15:76579019..76580557-chr15:76600815..76603366,2	K562	blood:
5	chr15:76601574..76614388-chr15:76623703..76634730,38	K562	blood:
6	chr15:76600511..76607655-chr15:76613791..76629933,32	MCF-7	breast:
7	chr15:76584135..76596152-chr15:76600630..76606670,15	MCF-7	breast:
8	chr15:76601310..76610583-chr15:76618699..76634643,40	K562	blood:

No data

Variant related genes	Relation type
ENSG00000140374	Chromatin interaction
ENSG00000259514	Chromatin interaction
ENSG00000159556	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520069	chr15:76602212-76609181	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76558000-76603000	Weak transcription	Aorta	Aorta
2	chr15:76576200-76602800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:76593400-76602600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr15:76597000-76602600	Weak transcription	Fetal Intestine Small	intestine
5	chr15:76599400-76602800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr15:76600800-76602800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr15:76601000-76602800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr15:76601200-76602600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:76601200-76602800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr15:76601400-76602800	Enhancers	Placenta	Placenta
11	chr15:76601600-76603000	Weak transcription	Gastric	stomach
12	chr15:76601800-76602600	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr15:76601800-76602800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:76601800-76602800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:76601800-76602800	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr15:76601800-76602800	Flanking Active TSS	HepG2	liver
17	chr15:76601800-76603000	Flanking Active TSS	Hela-S3	cervix
18	chr15:76602000-76602600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:76602000-76602600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr15:76602000-76602600	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr15:76602000-76602600	Enhancers	Fetal Brain Male	brain
22	chr15:76602000-76602600	Enhancers	Fetal Lung	lung
23	chr15:76602000-76602600	Enhancers	Right Ventricle	heart
24	chr15:76602000-76602600	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr15:76602000-76602800	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr15:76602000-76602800	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr15:76602000-76602800	Enhancers	Primary B cells from peripheral blood	blood
28	chr15:76602000-76602800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr15:76602000-76602800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr15:76602000-76602800	Enhancers	Brain Anterior Caudate	brain
31	chr15:76602000-76602800	Enhancers	Brain Cingulate Gyrus	brain
32	chr15:76602000-76602800	Enhancers	Brain Substantia Nigra	brain
33	chr15:76602000-76602800	Enhancers	Colon Smooth Muscle	Colon
34	chr15:76602000-76602800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr15:76602000-76602800	Enhancers	Fetal Muscle Leg	muscle
36	chr15:76602000-76602800	Enhancers	Left Ventricle	heart
37	chr15:76602000-76602800	Enhancers	Pancreas	Pancrea
38	chr15:76602000-76602800	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr15:76602000-76602800	Enhancers	Small Intestine	intestine
40	chr15:76602000-76602800	Enhancers	Stomach Mucosa	stomach
41	chr15:76602000-76602800	Enhancers	Thymus	Thymus
42	chr15:76602000-76603000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
43	chr15:76602000-76603000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr15:76602000-76603000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
45	chr15:76602000-76603000	Flanking Active TSS	Liver	Liver
46	chr15:76602000-76603000	Flanking Active TSS	Dnd41	blood
47	chr15:76602000-76603000	Flanking Active TSS	HMEC	breast
48	chr15:76602000-76603000	Flanking Active TSS	NHEK	skin
49	chr15:76602000-76603200	Flanking Active TSS	Adipose Nuclei	Adipose
50	chr15:76602000-76604000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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