Variant report

Variant	rs2470188
Chromosome Location	chr15:51661305-51661306
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:51660401..51662626-chr7:156685669..156687987,2	MCF-7	breast:
2	chr15:51659859..51663874-chr15:51668414..51672353,4	MCF-7	breast:
3	chr15:51631962..51635284-chr15:51658030..51661576,5	MCF-7	breast:
4	chr15:51655989..51658966-chr15:51659678..51663133,3	K562	blood:

Variant related genes	Relation type
ENSG00000186417	Chromatin interaction
ENSG00000105983	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2446415	1.00[YRI][hapmap]
rs2446419	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2459400	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2470187	1.00[CEU][hapmap]
rs2470190	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569400	chr15:50874964-51767265	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	esv34532	chr15:51276128-51752856	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv2758382	chr15:51282257-51830339	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv2760031	chr15:51282257-51830339	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	esv2757600	chr15:51352249-51783981	Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv904215	chr15:51542193-51673125	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
8	nsv904216	chr15:51631479-51739808	Bivalent Enhancer Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51640800-51676200	Weak transcription	Aorta	Aorta
2	chr15:51656000-51663400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr15:51656600-51661400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr15:51657800-51662600	Enhancers	Placenta	Placenta
5	chr15:51657800-51662600	Enhancers	Stomach Mucosa	stomach
6	chr15:51658400-51661400	Enhancers	Fetal Muscle Leg	muscle
7	chr15:51658400-51661600	Enhancers	Brain Substantia Nigra	brain
8	chr15:51659000-51661600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:51659000-51662200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:51659200-51661600	Enhancers	Brain Angular Gyrus	brain
11	chr15:51659200-51661600	Enhancers	Stomach Smooth Muscle	stomach
12	chr15:51659200-51661800	Enhancers	Hela-S3	cervix
13	chr15:51659200-51661800	Enhancers	NHDF-Ad	bronchial
14	chr15:51659200-51662600	Enhancers	Osteobl	bone
15	chr15:51659400-51662400	Enhancers	NHLF	lung
16	chr15:51659400-51662600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr15:51659800-51661400	Enhancers	Gastric	stomach
18	chr15:51659800-51661800	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr15:51660000-51661600	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr15:51660000-51662600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr15:51660000-51662800	Enhancers	HepG2	liver
22	chr15:51660000-51663400	Weak transcription	Adipose Nuclei	Adipose
23	chr15:51660000-51665000	Weak transcription	Brain Germinal Matrix	brain
24	chr15:51660200-51662000	Enhancers	NH-A	brain
25	chr15:51660200-51676200	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr15:51660400-51661400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr15:51660400-51661800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr15:51660400-51662400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr15:51660400-51663600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr15:51660600-51661400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr15:51660600-51665600	Weak transcription	Brain Hippocampus Middle	brain
32	chr15:51660800-51661800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:51660800-51662600	Enhancers	GM12878-XiMat	blood
34	chr15:51661000-51661400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr15:51661000-51661600	Flanking Active TSS	A549	lung
36	chr15:51661000-51662000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr15:51661200-51661400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr15:51661200-51661400	Enhancers	Duodenum Mucosa	Duodenum
39	chr15:51661200-51661400	Enhancers	Fetal Stomach	stomach
40	chr15:51661200-51661400	Enhancers	Left Ventricle	heart
41	chr15:51661200-51661400	Enhancers	Ovary	ovary
42	chr15:51661200-51661800	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr15:51661200-51661800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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