Variant report

Variant	rs2472806
Chromosome Location	chr6:14771707-14771708
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2472808	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2472809	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2472811	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2500081	0.81[AMR][1000 genomes]
rs2500085	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2500087	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023685	chr6:14514647-14838390	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14760400-14772400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:14763800-14777000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:14768000-14785200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:14768200-14771800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:14768200-14772400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:14768800-14772400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:14768800-14775600	Weak transcription	Gastric	stomach
8	chr6:14769800-14772000	Enhancers	Fetal Thymus	thymus
9	chr6:14770400-14772000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:14771200-14771800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:14771200-14772200	Enhancers	Placenta	Placenta
12	chr6:14771400-14772400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:14771400-14772400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:14771400-14772400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:14771400-14772400	Weak transcription	A549	lung
16	chr6:14771400-14772400	Weak transcription	K562	blood
17	chr6:14771400-14775400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr6:14771600-14772000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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