Variant report

Variant	rs2473919
Chromosome Location	chr11:34189648-34189649
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34189648..34198426-chr11:34377718..34382191,19	MCF-7	breast:
2	chr11:34186094..34192097-chr11:34378097..34382585,10	MCF-7	breast:
3	chr11:34182837..34186154-chr11:34188014..34190640,4	MCF-7	breast:
4	chr11:34125501..34128612-chr11:34187044..34189926,3	K562	blood:
5	chr11:34187334..34191068-chr11:34191112..34197188,7	K562	blood:

Variant related genes	Relation type
ENSG00000135372	Chromatin interaction
ENSG00000166016	Chromatin interaction

rs_ID	r²[population]
rs2467389	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2467391	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2955933	0.82[AMR][1000 genomes]
rs2955939	0.83[EUR][1000 genomes]
rs2957489	0.82[AMR][1000 genomes]
rs4756111	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7108719	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7120749	0.81[AMR][1000 genomes]

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34169600-34196200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:34172600-34190400	Strong transcription	Fetal Intestine Small	intestine
3	chr11:34173200-34195600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr11:34174400-34190800	Weak transcription	Colonic Mucosa	Colon
5	chr11:34174600-34193400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr11:34176800-34195600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr11:34177000-34196200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:34177200-34190200	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr11:34177400-34195400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr11:34177600-34194600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:34177600-34196200	Weak transcription	Primary T cells from cord blood	blood
12	chr11:34177800-34195800	Weak transcription	Spleen	Spleen
13	chr11:34177800-34196000	Weak transcription	GM12878-XiMat	blood
14	chr11:34178800-34192600	Strong transcription	Skeletal Muscle Male	skeletal muscle
15	chr11:34178800-34195200	Weak transcription	Hela-S3	cervix
16	chr11:34179200-34191000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:34179200-34195400	Weak transcription	Adipose Nuclei	Adipose
18	chr11:34179400-34196000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr11:34179600-34193600	Strong transcription	Liver	Liver
20	chr11:34180000-34195200	Strong transcription	HepG2	liver
21	chr11:34180600-34195400	Weak transcription	Fetal Thymus	thymus
22	chr11:34181000-34190000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:34181400-34195400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr11:34181800-34190200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:34181800-34190200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:34182200-34195400	Weak transcription	Osteobl	bone
27	chr11:34182400-34191600	Weak transcription	Left Ventricle	heart
28	chr11:34182600-34190000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:34182800-34196000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr11:34183000-34191800	Strong transcription	Right Ventricle	heart
31	chr11:34183000-34195200	Strong transcription	Stomach Smooth Muscle	stomach
32	chr11:34183600-34198000	Weak transcription	Fetal Lung	lung
33	chr11:34183800-34194400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr11:34184000-34190200	Weak transcription	NH-A	brain
35	chr11:34184200-34190000	Weak transcription	Pancreas	Pancrea
36	chr11:34184200-34191800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr11:34184200-34195400	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr11:34184200-34195400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:34184200-34195800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr11:34184400-34195400	Weak transcription	Brain Cingulate Gyrus	brain
41	chr11:34184600-34196000	Weak transcription	Gastric	stomach
42	chr11:34184800-34195400	Weak transcription	Brain Anterior Caudate	brain
43	chr11:34185000-34195400	Weak transcription	Brain Angular Gyrus	brain
44	chr11:34185200-34190000	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr11:34185200-34190800	Weak transcription	HSMM	muscle
46	chr11:34186000-34190400	Weak transcription	A549	lung
47	chr11:34186800-34191200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr11:34187000-34195400	Weak transcription	Brain Hippocampus Middle	brain
49	chr11:34188000-34190400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr11:34188000-34190400	Strong transcription	Fetal Stomach	stomach

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