Variant report

Variant	rs2473927
Chromosome Location	chr11:34176377-34176378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34173802..34178236-chr11:34378169..34382437,4	MCF-7	breast:
2	chr11:34171535..34173336-chr11:34174540..34176661,2	K562	blood:
3	chr11:34164448..34166995-chr11:34174472..34177049,2	MCF-7	breast:
4	chr11:34176305..34178305-chr11:34181100..34182936,2	K562	blood:
5	chr11:34176321..34179239-chr11:34186485..34189243,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166016	Chromatin interaction

rs_ID	r²[population]
rs1401355	1.00[AMR][1000 genomes]
rs2421460	1.00[AMR][1000 genomes]
rs2467387	0.87[LWK][hapmap];0.93[MKK][hapmap]
rs2473928	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2611101	1.00[AMR][1000 genomes]
rs34017560	1.00[AMR][1000 genomes]
rs36003235	1.00[AMR][1000 genomes]
rs61735314	1.00[AMR][1000 genomes]
rs7112880	1.00[AMR][1000 genomes]
rs73495526	1.00[AMR][1000 genomes]
rs73495527	1.00[AMR][1000 genomes]
rs73495537	1.00[AMR][1000 genomes]
rs73495538	1.00[AMR][1000 genomes]

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34128600-34176400	Strong transcription	Fetal Stomach	stomach
2	chr11:34128800-34178000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:34129000-34177400	Strong transcription	Osteobl	bone
4	chr11:34129000-34177800	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:34129200-34177800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:34129600-34177200	Strong transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:34129600-34178200	Strong transcription	Liver	Liver
8	chr11:34130000-34177000	Strong transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:34130000-34181800	Strong transcription	A549	lung
10	chr11:34130200-34177600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:34136200-34177200	Strong transcription	Adipose Nuclei	Adipose
12	chr11:34136200-34177200	Strong transcription	Skeletal Muscle Male	skeletal muscle
13	chr11:34138800-34185600	Strong transcription	Fetal Brain Female	brain
14	chr11:34146200-34187600	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr11:34150600-34178000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr11:34150800-34177200	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr11:34152200-34177600	Strong transcription	NHEK	skin
18	chr11:34152200-34184800	Strong transcription	Brain Germinal Matrix	brain
19	chr11:34152400-34186600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:34154600-34176800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
21	chr11:34155800-34177800	Strong transcription	Right Ventricle	heart
22	chr11:34164800-34177400	Strong transcription	Left Ventricle	heart
23	chr11:34165400-34177400	Weak transcription	Right Atrium	heart
24	chr11:34165800-34184600	Weak transcription	Stomach Mucosa	stomach
25	chr11:34166800-34182400	Weak transcription	Psoas Muscle	Psoas
26	chr11:34169600-34196200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:34170200-34178600	Weak transcription	Small Intestine	intestine
28	chr11:34170200-34183400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:34170400-34176600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:34170400-34177600	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr11:34170800-34182000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr11:34171000-34177400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr11:34171400-34177400	Strong transcription	H1 Cell Line	embryonic stem cell
34	chr11:34171400-34180000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr11:34171400-34180800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:34172200-34178800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr11:34172400-34176800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:34172400-34185200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:34172600-34176400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr11:34172600-34180000	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr11:34172600-34190400	Strong transcription	Fetal Intestine Small	intestine
42	chr11:34172800-34179000	Weak transcription	NH-A	brain
43	chr11:34172800-34180200	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr11:34173000-34178000	Weak transcription	Hela-S3	cervix
45	chr11:34173000-34182400	Strong transcription	Fetal Muscle Leg	muscle
46	chr11:34173000-34182400	Strong transcription	Placenta	Placenta
47	chr11:34173000-34183600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr11:34173200-34179200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr11:34173200-34180000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr11:34173200-34195600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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