Variant report

Variant	rs2474114
Chromosome Location	chr6:15148361-15148362
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15133229..15135738-chr6:15147564..15149146,2	K562	blood:
2	chr6:15147856..15151805-chr6:15244004..15248641,4	MCF-7	breast:
3	chr6:15096022..15098594-chr6:15145992..15148961,2	K562	blood:

Variant related genes	Relation type
ENSG00000271888	Chromatin interaction
ENSG00000008083	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2253602	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15145400-15148400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:15146400-15151000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr6:15146600-15150600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr6:15148000-15149600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:15148200-15148400	Enhancers	Fetal Muscle Trunk	muscle
6	chr6:15148200-15148600	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr6:15148200-15148600	Enhancers	K562	blood
8	chr6:15148200-15149200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:15148200-15149200	Enhancers	HSMM	muscle
10	chr6:15148200-15149400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:15148200-15149400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:15148200-15149400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:15148200-15149400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:15148200-15149400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:15148200-15149400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:15148200-15149400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:15148200-15149400	Enhancers	Esophagus	oesophagus
18	chr6:15148200-15149400	Enhancers	Fetal Brain Male	brain
19	chr6:15148200-15149400	Enhancers	Psoas Muscle	Psoas
20	chr6:15148200-15149400	Enhancers	NHEK	skin
21	chr6:15148200-15149400	Enhancers	Osteobl	bone
22	chr6:15148200-15149600	Enhancers	HMEC	breast

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