Variant report

Variant	rs2474152
Chromosome Location	chr6:144013059-144013060
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143996710..144001910-chr6:144005817..144014875,10	MCF-7	breast:
2	chr6:144011351..144015622-chr6:144016784..144019989,3	K562	blood:
3	chr6:144011387..144013559-chr6:144018568..144021455,2	MCF-7	breast:
4	chr6:143997575..144000803-chr6:144010017..144014247,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112419	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13202317	1.00[AFR][1000 genomes]
rs13217912	1.00[AFR][1000 genomes]
rs2328517	1.00[GIH][hapmap]
rs73003378	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv886737	chr6:144010570-144033992	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144003600-144015000	Weak transcription	Esophagus	oesophagus
2	chr6:144003600-144015000	Weak transcription	Gastric	stomach
3	chr6:144005000-144020400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr6:144005600-144016000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:144005800-144015200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:144006000-144013200	Weak transcription	Small Intestine	intestine
7	chr6:144006000-144017800	Weak transcription	Fetal Heart	heart
8	chr6:144007800-144013200	Enhancers	HepG2	liver
9	chr6:144007800-144013600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr6:144008000-144014000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:144008600-144015000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:144008800-144015000	Weak transcription	NHEK	skin
13	chr6:144009000-144013400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr6:144009000-144015200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:144009200-144015000	Weak transcription	HMEC	breast
16	chr6:144009200-144016200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:144009400-144015600	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr6:144009400-144016600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:144009600-144015000	Weak transcription	Colon Smooth Muscle	Colon
20	chr6:144010000-144014000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr6:144010200-144013600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr6:144010200-144015200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:144010200-144019600	Weak transcription	Spleen	Spleen
24	chr6:144010400-144013200	Weak transcription	Fetal Intestine Small	intestine
25	chr6:144010400-144015000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:144010400-144017800	Weak transcription	Ovary	ovary
27	chr6:144010400-144020000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:144010600-144013200	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr6:144010600-144013400	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr6:144010800-144013600	Enhancers	Muscle Satellite Cultured Cells	--
31	chr6:144011000-144013200	Enhancers	Osteobl	bone
32	chr6:144011200-144013400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr6:144011200-144013400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:144011200-144014400	Enhancers	Fetal Lung	lung
35	chr6:144011200-144016200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:144011400-144013400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:144011400-144013400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr6:144011400-144016000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:144011600-144013200	Weak transcription	Aorta	Aorta
40	chr6:144011600-144013200	Weak transcription	Psoas Muscle	Psoas
41	chr6:144011600-144013400	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr6:144011600-144013800	Weak transcription	Right Ventricle	heart
43	chr6:144011600-144014000	Enhancers	HSMMtube	muscle
44	chr6:144011600-144014200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:144011600-144014200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:144011600-144015000	Weak transcription	Lung	lung
47	chr6:144011600-144015600	Weak transcription	Primary hematopoietic stem cells	blood
48	chr6:144011600-144053200	Weak transcription	Hela-S3	cervix
49	chr6:144011800-144013800	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr6:144011800-144014000	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links