The 2.0 version of rSNPBase

Variant report

Variant rs2475233
Chromosome Location chr10:116272986-116272987
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:79 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:116225600-116278800 Weak transcription HSMM muscle
2 chr10:116243000-116286200 Weak transcription Spleen Spleen
3 chr10:116259800-116276800 Weak transcription Thymus Thymus
4 chr10:116261200-116279400 Weak transcription GM12878-XiMat blood
5 chr10:116262600-116274800 Weak transcription Fetal Thymus thymus
6 chr10:116265400-116279400 Weak transcription Rectal Smooth Muscle rectum
7 chr10:116265600-116274800 Weak transcription H9 Cell Line embryonic stem cell
8 chr10:116265600-116275200 Weak transcription Cortex derived primary cultured neurospheres brain
9 chr10:116266000-116275000 Weak transcription iPS-20b Cell Line embryonic stem cell
10 chr10:116266000-116276600 Weak transcription Brain Inferior Temporal Lobe brain
11 chr10:116267600-116274800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
12 chr10:116267600-116275000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
13 chr10:116267600-116278800 Weak transcription Colonic Mucosa Colon
14 chr10:116267600-116279200 Weak transcription Aorta Aorta
15 chr10:116267800-116273200 Weak transcription Pancreas Pancrea
16 chr10:116267800-116274800 Weak transcription HUES48 Cell Line embryonic stem cell
17 chr10:116267800-116278400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr10:116268000-116273000 Weak transcription Pancreatic Islets Pancreatic Islet
19 chr10:116268000-116273400 Weak transcription Liver Liver
20 chr10:116268000-116277600 Weak transcription A549 lung
21 chr10:116268000-116278800 Weak transcription Skeletal Muscle Female skeletal muscle
22 chr10:116268200-116276200 Weak transcription Brain Substantia Nigra brain
23 chr10:116268200-116276600 Weak transcription Fetal Stomach stomach
24 chr10:116268200-116278800 Weak transcription Fetal Intestine Large intestine
25 chr10:116268200-116281600 Weak transcription Brain Anterior Caudate brain
26 chr10:116268400-116276800 Weak transcription Fetal Intestine Small intestine
27 chr10:116268400-116277000 Weak transcription Fetal Muscle Trunk muscle
28 chr10:116268600-116273200 Weak transcription Duodenum Mucosa Duodenum
29 chr10:116268600-116277000 Weak transcription Skeletal Muscle Male skeletal muscle
30 chr10:116268800-116273200 Weak transcription Rectal Mucosa Donor 29 rectum
31 chr10:116269000-116273400 Weak transcription Fetal Heart heart
32 chr10:116269000-116275000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
33 chr10:116269000-116276400 Weak transcription Adipose Nuclei Adipose
34 chr10:116269000-116278000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr10:116269200-116273200 Weak transcription Rectal Mucosa Donor 31 rectum
36 chr10:116269200-116273400 Weak transcription Right Atrium heart
37 chr10:116269200-116274800 Weak transcription Esophagus oesophagus
38 chr10:116269200-116275000 Weak transcription Gastric stomach
39 chr10:116269200-116278800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
40 chr10:116269400-116273400 Weak transcription Breast Myoepithelial Primary Cells Breast
41 chr10:116269400-116273800 Weak transcription Primary hematopoietic stem cells blood
42 chr10:116269400-116275200 Weak transcription Lung lung
43 chr10:116269600-116273200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
44 chr10:116269600-116273200 Weak transcription Sigmoid Colon Sigmoid Colon
45 chr10:116269600-116275400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
46 chr10:116269600-116276200 Weak transcription Primary hematopoietic stem cells short term culture blood
47 chr10:116269800-116273400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
48 chr10:116269800-116275400 Weak transcription Primary B cells from cord blood blood
49 chr10:116270600-116283000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
50 chr10:116271600-116276400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --

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Last update: Aug 31, 2015