Variant report

Variant	rs2475526
Chromosome Location	chr13:29656725-29656726
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12184935	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs167832	1.00[CHB][hapmap]
rs17651128	0.84[CEU][hapmap];0.83[AMR][1000 genomes]
rs2479773	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.97[ASN][1000 genomes]
rs326509	1.00[CHB][hapmap]
rs7323830	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9314935	0.89[CEU][hapmap];0.80[GIH][hapmap];0.81[MEX][hapmap]
rs9506088	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9506091	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9506096	0.84[EUR][1000 genomes]
rs9508248	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9508249	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9508250	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9508251	0.92[GIH][hapmap];0.81[MEX][hapmap]
rs9508252	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9508253	0.87[GIH][hapmap]
rs9508254	0.84[CEU][hapmap];0.83[AMR][1000 genomes]
rs9508255	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9508256	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9508257	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9508260	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9579281	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9579289	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv3406145	chr13:29616606-29917459	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2475526	MTMR6	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29654600-29657000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr13:29654600-29657600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr13:29655000-29656800	Enhancers	Dnd41	blood
4	chr13:29655000-29657600	Enhancers	Fetal Heart	heart
5	chr13:29655800-29656800	Enhancers	Primary T cells fromperipheralblood	blood
6	chr13:29655800-29658000	Enhancers	Primary T cells from cord blood	blood
7	chr13:29656200-29656800	Enhancers	Aorta	Aorta
8	chr13:29656200-29656800	Enhancers	Left Ventricle	heart
9	chr13:29656200-29657200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr13:29656600-29656800	Enhancers	Lung	lung

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