Variant report

Variant	rs2476174
Chromosome Location	chr13:80174234-80174235
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12853669	0.83[ASN][1000 genomes]
rs12873323	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12873970	0.81[ASN][1000 genomes]
rs17071691	0.81[ASN][1000 genomes]
rs28882153	0.85[ASN][1000 genomes]
rs34574726	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4597201	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55902954	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6563120	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6563123	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71436528	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71436529	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7324768	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7983451	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7983467	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916983	chr13:80065879-80249702	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1041994	chr13:80123596-80247708	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80168600-80177600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:80168600-80177600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:80170200-80176800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:80170200-80178800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr13:80172000-80178800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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